Gene : Carub.0003s0668 C. rubella v1.1
Defline:  (1 of 1) PTHR12741:SF12 - CALLOSE SYNTHASE 9 Genomic Order:  668
Name:  ? Carub.0003s0668 Secondary Identifier:  ? PAC:39240134
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-6773 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s0668 0.5kb upstream 0.5kb upstream 14620 true scaffold_3: 2293430-2308049 Capsella rubella
Carub.0003s0668 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 2307550-2308049 Capsella rubella
Carub.0003s0668 0.5kb downstream 0.5kb downstream 14620 true scaffold_3: 2292930-2307549 Capsella rubella
Carub.0003s0668 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 2292930-2293429 Capsella rubella
Carub.0003s0668 1.0kb upstream 1.0kb upstream 15120 true scaffold_3: 2293430-2308549 Capsella rubella
Carub.0003s0668 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 2307550-2308549 Capsella rubella
Carub.0003s0668 1.0kb downstream 1.0kb downstream 15120 true scaffold_3: 2292430-2307549 Capsella rubella
Carub.0003s0668 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 2292430-2293429 Capsella rubella
Carub.0003s0668 2.0kb upstream 2.0kb upstream 16120 true scaffold_3: 2293430-2309549 Capsella rubella
Carub.0003s0668 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 2307550-2309549 Capsella rubella
Carub.0003s0668 2.0kb downstream 2.0kb downstream 16120 true scaffold_3: 2291430-2307549 Capsella rubella
Carub.0003s0668 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 2291430-2293429 Capsella rubella
Carub.0003s0668 5.0kb upstream 5.0kb upstream 19120 true scaffold_3: 2293430-2312549 Capsella rubella
Carub.0003s0668 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 2307550-2312549 Capsella rubella
Carub.0003s0668 5.0kb downstream 5.0kb downstream 19120 true scaffold_3: 2288430-2307549 Capsella rubella
Carub.0003s0668 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 2288430-2293429 Capsella rubella
Carub.0003s0668 10.0kb upstream 10.0kb upstream 24120 true scaffold_3: 2293430-2317549 Capsella rubella
Carub.0003s0668 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 2307550-2317549 Capsella rubella
Carub.0003s0668 10.0kb downstream 10.0kb downstream 24120 true scaffold_3: 2283430-2307549 Capsella rubella
Carub.0003s0668 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 2283430-2293429 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363875 5261 Brassicaceae View MSA
123830920 5264 Brassicales-Malvales View MSA
124350687 5266 SBM View MSA
124241987 5268 Malvidae View MSA
124064291 5270 Rosid View MSA
123749286 5271 Pentapetalae View MSA
122796440 5272 Eudicot View MSA
122050431 5273 Angiosperm View MSA
121349066 5274 Embryophyte View MSA
123428420 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain