Gene : Carub.0003s0671 C. rubella v1.1
Defline:  (1 of 12) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  671
Name:  ? Carub.0003s0671 Secondary Identifier:  ? PAC:39240156
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s0671 0.5kb upstream 0.5kb upstream 2176 true scaffold_3: 2314429-2316604 Capsella rubella
Carub.0003s0671 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 2314429-2314928 Capsella rubella
Carub.0003s0671 0.5kb downstream 0.5kb downstream 2176 true scaffold_3: 2314929-2317104 Capsella rubella
Carub.0003s0671 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 2316605-2317104 Capsella rubella
Carub.0003s0671 1.0kb upstream 1.0kb upstream 2676 true scaffold_3: 2313929-2316604 Capsella rubella
Carub.0003s0671 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 2313929-2314928 Capsella rubella
Carub.0003s0671 1.0kb downstream 1.0kb downstream 2676 true scaffold_3: 2314929-2317604 Capsella rubella
Carub.0003s0671 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 2316605-2317604 Capsella rubella
Carub.0003s0671 2.0kb upstream 2.0kb upstream 3676 true scaffold_3: 2312929-2316604 Capsella rubella
Carub.0003s0671 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 2312929-2314928 Capsella rubella
Carub.0003s0671 2.0kb downstream 2.0kb downstream 3676 true scaffold_3: 2314929-2318604 Capsella rubella
Carub.0003s0671 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 2316605-2318604 Capsella rubella
Carub.0003s0671 5.0kb upstream 5.0kb upstream 6676 true scaffold_3: 2309929-2316604 Capsella rubella
Carub.0003s0671 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 2309929-2314928 Capsella rubella
Carub.0003s0671 5.0kb downstream 5.0kb downstream 6676 true scaffold_3: 2314929-2321604 Capsella rubella
Carub.0003s0671 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 2316605-2321604 Capsella rubella
Carub.0003s0671 10.0kb upstream 10.0kb upstream 11676 true scaffold_3: 2304929-2316604 Capsella rubella
Carub.0003s0671 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 2304929-2314928 Capsella rubella
Carub.0003s0671 10.0kb downstream 10.0kb downstream 11676 true scaffold_3: 2314929-2326604 Capsella rubella
Carub.0003s0671 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 2316605-2326604 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360414 5261 Brassicaceae View MSA
123797948 5264 Brassicales-Malvales View MSA
124295645 5266 SBM View MSA
124148023 5268 Malvidae View MSA
123874109 5270 Rosid View MSA
123746059 5271 Pentapetalae View MSA
122771759 5272 Eudicot View MSA
122048165 5273 Angiosperm View MSA
121344169 5274 Embryophyte View MSA
123379991 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain