Gene : Araha.0028s0013 A. halleri v1.1
Defline:  (1 of 1) PTHR18968:SF112 - ACETOLACTATE SYNTHASE, CHLOROPLASTIC Genomic Order:  13
Name:  ? Araha.0028s0013 Secondary Identifier:  ? PAC:28854331
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ahalleri BRANCHED-CHAIN-AA-SYN-PWY Arabidopsis halleri pathologic  
Ahalleri ILEUSYN-PWY Arabidopsis halleri pathologic  
Ahalleri PWY-3001 Arabidopsis halleri pathologic  
Ahalleri VALSYN-PWY Arabidopsis halleri pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.0028s0013 0.5kb upstream 0.5kb upstream 2825 true Scaffold28: 45289-48113 Arabidopsis halleri
Araha.0028s0013 0.5kb upstream 0.5kb upstream 500 false Scaffold28: 45289-45788 Arabidopsis halleri
Araha.0028s0013 0.5kb downstream 0.5kb downstream 2825 true Scaffold28: 45789-48613 Arabidopsis halleri
Araha.0028s0013 0.5kb downstream 0.5kb downstream 500 false Scaffold28: 48114-48613 Arabidopsis halleri
Araha.0028s0013 1.0kb upstream 1.0kb upstream 3325 true Scaffold28: 44789-48113 Arabidopsis halleri
Araha.0028s0013 1.0kb upstream 1.0kb upstream 1000 false Scaffold28: 44789-45788 Arabidopsis halleri
Araha.0028s0013 1.0kb downstream 1.0kb downstream 3325 true Scaffold28: 45789-49113 Arabidopsis halleri
Araha.0028s0013 1.0kb downstream 1.0kb downstream 1000 false Scaffold28: 48114-49113 Arabidopsis halleri
Araha.0028s0013 2.0kb upstream 2.0kb upstream 4325 true Scaffold28: 43789-48113 Arabidopsis halleri
Araha.0028s0013 2.0kb upstream 2.0kb upstream 2000 false Scaffold28: 43789-45788 Arabidopsis halleri
Araha.0028s0013 2.0kb downstream 2.0kb downstream 4325 true Scaffold28: 45789-50113 Arabidopsis halleri
Araha.0028s0013 2.0kb downstream 2.0kb downstream 2000 false Scaffold28: 48114-50113 Arabidopsis halleri
Araha.0028s0013 5.0kb upstream 5.0kb upstream 7325 true Scaffold28: 40789-48113 Arabidopsis halleri
Araha.0028s0013 5.0kb upstream 5.0kb upstream 5000 false Scaffold28: 40789-45788 Arabidopsis halleri
Araha.0028s0013 5.0kb downstream 5.0kb downstream 7325 true Scaffold28: 45789-53113 Arabidopsis halleri
Araha.0028s0013 5.0kb downstream 5.0kb downstream 5000 false Scaffold28: 48114-53113 Arabidopsis halleri
Araha.0028s0013 10.0kb upstream 10.0kb upstream 12325 true Scaffold28: 35789-48113 Arabidopsis halleri
Araha.0028s0013 10.0kb upstream 10.0kb upstream 10000 false Scaffold28: 35789-45788 Arabidopsis halleri
Araha.0028s0013 10.0kb downstream 10.0kb downstream 12325 true Scaffold28: 45789-58113 Arabidopsis halleri
Araha.0028s0013 10.0kb downstream 10.0kb downstream 10000 false Scaffold28: 48114-58113 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372690 5261 Brassicaceae View MSA
123838069 5264 Brassicales-Malvales View MSA
124338702 5266 SBM View MSA
124237880 5268 Malvidae View MSA
124061754 5270 Rosid View MSA
123740157 5271 Pentapetalae View MSA
122787294 5272 Eudicot View MSA
122042643 5273 Angiosperm View MSA
121346996 5274 Embryophyte View MSA
123424213 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain