Gene : Araha.0400s0002 A. halleri v1.1
Defline:  (1 of 1) PTHR10742:SF294 - PROTOPORPHYRINOGEN OXIDASE 1, CHLOROPLASTIC Genomic Order:  2
Name:  ? Araha.0400s0002 Secondary Identifier:  ? PAC:28839583
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ahalleri CHLOROPHYLL-SYN Arabidopsis halleri pathologic  
Ahalleri HEME-BIOSYNTHESIS-II Arabidopsis halleri pathologic  
Ahalleri PWY-5918 Arabidopsis halleri pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.0400s0002 0.5kb upstream 0.5kb upstream 2343 true Scaffold400: 24165-26507 Arabidopsis halleri
Araha.0400s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold400: 24165-24664 Arabidopsis halleri
Araha.0400s0002 0.5kb downstream 0.5kb downstream 2343 true Scaffold400: 24665-27007 Arabidopsis halleri
Araha.0400s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold400: 26508-27007 Arabidopsis halleri
Araha.0400s0002 1.0kb upstream 1.0kb upstream 2843 true Scaffold400: 23665-26507 Arabidopsis halleri
Araha.0400s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold400: 23665-24664 Arabidopsis halleri
Araha.0400s0002 1.0kb downstream 1.0kb downstream 2843 true Scaffold400: 24665-27507 Arabidopsis halleri
Araha.0400s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold400: 26508-27507 Arabidopsis halleri
Araha.0400s0002 2.0kb upstream 2.0kb upstream 3843 true Scaffold400: 22665-26507 Arabidopsis halleri
Araha.0400s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold400: 22665-24664 Arabidopsis halleri
Araha.0400s0002 2.0kb downstream 2.0kb downstream 3843 true Scaffold400: 24665-28507 Arabidopsis halleri
Araha.0400s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold400: 26508-28507 Arabidopsis halleri
Araha.0400s0002 5.0kb upstream 5.0kb upstream 6843 true Scaffold400: 19665-26507 Arabidopsis halleri
Araha.0400s0002 5.0kb upstream 5.0kb upstream 5000 false Scaffold400: 19665-24664 Arabidopsis halleri
Araha.0400s0002 5.0kb downstream 5.0kb downstream 4351 true Scaffold400: 24665-29015 Arabidopsis halleri
Araha.0400s0002 5.0kb downstream 5.0kb downstream 2508 false Scaffold400: 26508-29015 Arabidopsis halleri
Araha.0400s0002 10.0kb upstream 10.0kb upstream 11843 true Scaffold400: 14665-26507 Arabidopsis halleri
Araha.0400s0002 10.0kb upstream 10.0kb upstream 10000 false Scaffold400: 14665-24664 Arabidopsis halleri
Araha.0400s0002 10.0kb downstream 10.0kb downstream 4351 true Scaffold400: 24665-29015 Arabidopsis halleri
Araha.0400s0002 10.0kb downstream 10.0kb downstream 2508 false Scaffold400: 26508-29015 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372816 5261 Brassicaceae View MSA
123832763 5264 Brassicales-Malvales View MSA
124343518 5266 SBM View MSA
124242274 5268 Malvidae View MSA
124065931 5270 Rosid View MSA
123747490 5271 Pentapetalae View MSA
122787686 5272 Eudicot View MSA
122041725 5273 Angiosperm View MSA
121347394 5274 Embryophyte View MSA
123424000 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain