Gene : Araha.1454s0003 A. halleri v1.1
Defline:  (1 of 1) PTHR11439//PTHR11439:SF173 - GAG-POL-RELATED RETROTRANSPOSON Genomic Order:  3
Name:  ? Araha.1454s0003 Secondary Identifier:  ? PAC:28840598
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.1454s0003 0.5kb upstream 0.5kb upstream 1658 true Scaffold1454: 29368-31025 Arabidopsis halleri
Araha.1454s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold1454: 30526-31025 Arabidopsis halleri
Araha.1454s0003 0.5kb downstream 0.5kb downstream 1658 true Scaffold1454: 28868-30525 Arabidopsis halleri
Araha.1454s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold1454: 28868-29367 Arabidopsis halleri
Araha.1454s0003 1.0kb upstream 1.0kb upstream 2158 true Scaffold1454: 29368-31525 Arabidopsis halleri
Araha.1454s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold1454: 30526-31525 Arabidopsis halleri
Araha.1454s0003 1.0kb downstream 1.0kb downstream 2158 true Scaffold1454: 28368-30525 Arabidopsis halleri
Araha.1454s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold1454: 28368-29367 Arabidopsis halleri
Araha.1454s0003 2.0kb upstream 2.0kb upstream 3158 true Scaffold1454: 29368-32525 Arabidopsis halleri
Araha.1454s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold1454: 30526-32525 Arabidopsis halleri
Araha.1454s0003 2.0kb downstream 2.0kb downstream 3158 true Scaffold1454: 27368-30525 Arabidopsis halleri
Araha.1454s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold1454: 27368-29367 Arabidopsis halleri
Araha.1454s0003 5.0kb upstream 5.0kb upstream 6158 true Scaffold1454: 29368-35525 Arabidopsis halleri
Araha.1454s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold1454: 30526-35525 Arabidopsis halleri
Araha.1454s0003 5.0kb downstream 5.0kb downstream 6158 true Scaffold1454: 24368-30525 Arabidopsis halleri
Araha.1454s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold1454: 24368-29367 Arabidopsis halleri
Araha.1454s0003 10.0kb upstream 10.0kb upstream 11158 true Scaffold1454: 29368-40525 Arabidopsis halleri
Araha.1454s0003 10.0kb upstream 10.0kb upstream 10000 false Scaffold1454: 30526-40525 Arabidopsis halleri
Araha.1454s0003 10.0kb downstream 10.0kb downstream 11158 true Scaffold1454: 19368-30525 Arabidopsis halleri
Araha.1454s0003 10.0kb downstream 10.0kb downstream 10000 false Scaffold1454: 19368-29367 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121483858 5273 Angiosperm Singleton cluster - no MSA
122317573 5261 Brassicaceae Singleton cluster - no MSA
123759173 5264 Brassicales-Malvales Singleton cluster - no MSA
124257808 5266 SBM Singleton cluster - no MSA
124114431 5268 Malvidae Singleton cluster - no MSA
123843823 5270 Rosid Singleton cluster - no MSA
123430106 5271 Pentapetalae Singleton cluster - no MSA
122465727 5272 Eudicot Singleton cluster - no MSA
120757253 5274 Embryophyte Singleton cluster - no MSA
122799713 5275 Viridiplantae Singleton cluster - no MSA

0 Rna Seq Expressions

0 Strain