Gene : Araha.2773s0005 A. halleri v1.1
Defline:  (1 of 2) 5.2.1.13 - Prolycopene isomerase / CRTISO Genomic Order:  5
Name:  ? Araha.2773s0005 Secondary Identifier:  ? PAC:28860490
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ahalleri CAROTENOID-PWY Arabidopsis halleri pathologic  
Ahalleri PWY-6475 Arabidopsis halleri pathologic  

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.2773s0005 0.5kb upstream 0.5kb upstream 5671 true Scaffold2773: 13722-19392 Arabidopsis halleri
Araha.2773s0005 0.5kb upstream 0.5kb upstream 500 false Scaffold2773: 13722-14221 Arabidopsis halleri
Araha.2773s0005 0.5kb downstream 0.5kb downstream 5671 true Scaffold2773: 14222-19892 Arabidopsis halleri
Araha.2773s0005 0.5kb downstream 0.5kb downstream 500 false Scaffold2773: 19393-19892 Arabidopsis halleri
Araha.2773s0005 1.0kb upstream 1.0kb upstream 6171 true Scaffold2773: 13222-19392 Arabidopsis halleri
Araha.2773s0005 1.0kb upstream 1.0kb upstream 1000 false Scaffold2773: 13222-14221 Arabidopsis halleri
Araha.2773s0005 1.0kb downstream 1.0kb downstream 6171 true Scaffold2773: 14222-20392 Arabidopsis halleri
Araha.2773s0005 1.0kb downstream 1.0kb downstream 1000 false Scaffold2773: 19393-20392 Arabidopsis halleri
Araha.2773s0005 2.0kb upstream 2.0kb upstream 7171 true Scaffold2773: 12222-19392 Arabidopsis halleri
Araha.2773s0005 2.0kb upstream 2.0kb upstream 2000 false Scaffold2773: 12222-14221 Arabidopsis halleri
Araha.2773s0005 2.0kb downstream 2.0kb downstream 7171 true Scaffold2773: 14222-21392 Arabidopsis halleri
Araha.2773s0005 2.0kb downstream 2.0kb downstream 2000 false Scaffold2773: 19393-21392 Arabidopsis halleri
Araha.2773s0005 5.0kb upstream 5.0kb upstream 10171 true Scaffold2773: 9222-19392 Arabidopsis halleri
Araha.2773s0005 5.0kb upstream 5.0kb upstream 5000 false Scaffold2773: 9222-14221 Arabidopsis halleri
Araha.2773s0005 5.0kb downstream 5.0kb downstream 10171 true Scaffold2773: 14222-24392 Arabidopsis halleri
Araha.2773s0005 5.0kb downstream 5.0kb downstream 5000 false Scaffold2773: 19393-24392 Arabidopsis halleri
Araha.2773s0005 10.0kb upstream 10.0kb upstream 15171 true Scaffold2773: 4222-19392 Arabidopsis halleri
Araha.2773s0005 10.0kb upstream 10.0kb upstream 10000 false Scaffold2773: 4222-14221 Arabidopsis halleri
Araha.2773s0005 10.0kb downstream 10.0kb downstream 15171 true Scaffold2773: 14222-29392 Arabidopsis halleri
Araha.2773s0005 10.0kb downstream 10.0kb downstream 10000 false Scaffold2773: 19393-29392 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026345 5273 Angiosperm View MSA
122362908 5261 Brassicaceae View MSA
123831028 5264 Brassicales-Malvales View MSA
124343687 5266 SBM View MSA
124242220 5268 Malvidae View MSA
124064637 5270 Rosid View MSA
123738016 5271 Pentapetalae View MSA
122791420 5272 Eudicot View MSA
121345795 5274 Embryophyte View MSA
123425130 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain