Gene : Araha.3539s0020 A. halleri v1.1
Defline:  (1 of 5) 6.1.1.12 - Aspartate--tRNA ligase / Aspartyl-tRNA synthetase Genomic Order:  20
Name:  ? Araha.3539s0020 Secondary Identifier:  ? PAC:28838138
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ahalleri TRNA-CHARGING-PWY Arabidopsis halleri pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.3539s0020 0.5kb upstream 0.5kb upstream 3393 true Scaffold3539: 99792-103184 Arabidopsis halleri
Araha.3539s0020 0.5kb upstream 0.5kb upstream 500 false Scaffold3539: 102685-103184 Arabidopsis halleri
Araha.3539s0020 0.5kb downstream 0.5kb downstream 3393 true Scaffold3539: 99292-102684 Arabidopsis halleri
Araha.3539s0020 0.5kb downstream 0.5kb downstream 500 false Scaffold3539: 99292-99791 Arabidopsis halleri
Araha.3539s0020 1.0kb upstream 1.0kb upstream 3893 true Scaffold3539: 99792-103684 Arabidopsis halleri
Araha.3539s0020 1.0kb upstream 1.0kb upstream 1000 false Scaffold3539: 102685-103684 Arabidopsis halleri
Araha.3539s0020 1.0kb downstream 1.0kb downstream 3893 true Scaffold3539: 98792-102684 Arabidopsis halleri
Araha.3539s0020 1.0kb downstream 1.0kb downstream 1000 false Scaffold3539: 98792-99791 Arabidopsis halleri
Araha.3539s0020 2.0kb upstream 2.0kb upstream 4893 true Scaffold3539: 99792-104684 Arabidopsis halleri
Araha.3539s0020 2.0kb upstream 2.0kb upstream 2000 false Scaffold3539: 102685-104684 Arabidopsis halleri
Araha.3539s0020 2.0kb downstream 2.0kb downstream 4893 true Scaffold3539: 97792-102684 Arabidopsis halleri
Araha.3539s0020 2.0kb downstream 2.0kb downstream 2000 false Scaffold3539: 97792-99791 Arabidopsis halleri
Araha.3539s0020 5.0kb upstream 5.0kb upstream 7893 true Scaffold3539: 99792-107684 Arabidopsis halleri
Araha.3539s0020 5.0kb upstream 5.0kb upstream 5000 false Scaffold3539: 102685-107684 Arabidopsis halleri
Araha.3539s0020 5.0kb downstream 5.0kb downstream 7893 true Scaffold3539: 94792-102684 Arabidopsis halleri
Araha.3539s0020 5.0kb downstream 5.0kb downstream 5000 false Scaffold3539: 94792-99791 Arabidopsis halleri
Araha.3539s0020 10.0kb upstream 10.0kb upstream 12893 true Scaffold3539: 99792-112684 Arabidopsis halleri
Araha.3539s0020 10.0kb upstream 10.0kb upstream 10000 false Scaffold3539: 102685-112684 Arabidopsis halleri
Araha.3539s0020 10.0kb downstream 10.0kb downstream 12893 true Scaffold3539: 89792-102684 Arabidopsis halleri
Araha.3539s0020 10.0kb downstream 10.0kb downstream 10000 false Scaffold3539: 89792-99791 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373469 5261 Brassicaceae View MSA
123830124 5264 Brassicales-Malvales View MSA
124340774 5266 SBM View MSA
124240572 5268 Malvidae View MSA
124066804 5270 Rosid View MSA
123746132 5271 Pentapetalae View MSA
122792438 5272 Eudicot View MSA
122047949 5273 Angiosperm View MSA
121349506 5274 Embryophyte View MSA
123428007 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain