Gene : Araha.3842s0005 A. halleri v1.1
Defline:  (1 of 1) PTHR22594:SF20 - LYSINE--TRNA LIGASE Genomic Order:  5
Name:  ? Araha.3842s0005 Secondary Identifier:  ? PAC:28848701
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ahalleri TRNA-CHARGING-PWY Arabidopsis halleri pathologic  

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.3842s0005 0.5kb upstream 0.5kb upstream 4236 true Scaffold3842: 14610-18845 Arabidopsis halleri
Araha.3842s0005 0.5kb upstream 0.5kb upstream 500 false Scaffold3842: 14610-15109 Arabidopsis halleri
Araha.3842s0005 0.5kb downstream 0.5kb downstream 4236 true Scaffold3842: 15110-19345 Arabidopsis halleri
Araha.3842s0005 0.5kb downstream 0.5kb downstream 500 false Scaffold3842: 18846-19345 Arabidopsis halleri
Araha.3842s0005 1.0kb upstream 1.0kb upstream 4736 true Scaffold3842: 14110-18845 Arabidopsis halleri
Araha.3842s0005 1.0kb upstream 1.0kb upstream 1000 false Scaffold3842: 14110-15109 Arabidopsis halleri
Araha.3842s0005 1.0kb downstream 1.0kb downstream 4736 true Scaffold3842: 15110-19845 Arabidopsis halleri
Araha.3842s0005 1.0kb downstream 1.0kb downstream 1000 false Scaffold3842: 18846-19845 Arabidopsis halleri
Araha.3842s0005 2.0kb upstream 2.0kb upstream 5736 true Scaffold3842: 13110-18845 Arabidopsis halleri
Araha.3842s0005 2.0kb upstream 2.0kb upstream 2000 false Scaffold3842: 13110-15109 Arabidopsis halleri
Araha.3842s0005 2.0kb downstream 2.0kb downstream 5736 true Scaffold3842: 15110-20845 Arabidopsis halleri
Araha.3842s0005 2.0kb downstream 2.0kb downstream 2000 false Scaffold3842: 18846-20845 Arabidopsis halleri
Araha.3842s0005 5.0kb upstream 5.0kb upstream 8736 true Scaffold3842: 10110-18845 Arabidopsis halleri
Araha.3842s0005 5.0kb upstream 5.0kb upstream 5000 false Scaffold3842: 10110-15109 Arabidopsis halleri
Araha.3842s0005 5.0kb downstream 5.0kb downstream 8736 true Scaffold3842: 15110-23845 Arabidopsis halleri
Araha.3842s0005 5.0kb downstream 5.0kb downstream 5000 false Scaffold3842: 18846-23845 Arabidopsis halleri
Araha.3842s0005 10.0kb upstream 10.0kb upstream 13736 true Scaffold3842: 5110-18845 Arabidopsis halleri
Araha.3842s0005 10.0kb upstream 10.0kb upstream 10000 false Scaffold3842: 5110-15109 Arabidopsis halleri
Araha.3842s0005 10.0kb downstream 10.0kb downstream 13736 true Scaffold3842: 15110-28845 Arabidopsis halleri
Araha.3842s0005 10.0kb downstream 10.0kb downstream 10000 false Scaffold3842: 18846-28845 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363133 5261 Brassicaceae View MSA
123829318 5264 Brassicales-Malvales View MSA
124344689 5266 SBM View MSA
124239048 5268 Malvidae View MSA
124063653 5270 Rosid View MSA
123739204 5271 Pentapetalae View MSA
122788489 5272 Eudicot View MSA
122044302 5273 Angiosperm View MSA
121346599 5274 Embryophyte View MSA
123423817 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain