Gene : Araha.4965s0004 A. halleri v1.1
Defline:  (1 of 1) PTHR11504 - CYTOCHROME C OXIDASE POLYPEPTIDE VIA Genomic Order:  4
Name:  ? Araha.4965s0004 Secondary Identifier:  ? PAC:28857422
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ahalleri PWY-3781 Arabidopsis halleri pathologic  
Ahalleri PWY-7279 Arabidopsis halleri pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.4965s0004 0.5kb upstream 0.5kb upstream 1865 true Scaffold4965: 30639-32503 Arabidopsis halleri
Araha.4965s0004 0.5kb upstream 0.5kb upstream 500 false Scaffold4965: 32004-32503 Arabidopsis halleri
Araha.4965s0004 0.5kb downstream 0.5kb downstream 1865 true Scaffold4965: 30139-32003 Arabidopsis halleri
Araha.4965s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold4965: 30139-30638 Arabidopsis halleri
Araha.4965s0004 1.0kb upstream 1.0kb upstream 2365 true Scaffold4965: 30639-33003 Arabidopsis halleri
Araha.4965s0004 1.0kb upstream 1.0kb upstream 1000 false Scaffold4965: 32004-33003 Arabidopsis halleri
Araha.4965s0004 1.0kb downstream 1.0kb downstream 2365 true Scaffold4965: 29639-32003 Arabidopsis halleri
Araha.4965s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold4965: 29639-30638 Arabidopsis halleri
Araha.4965s0004 2.0kb upstream 2.0kb upstream 3365 true Scaffold4965: 30639-34003 Arabidopsis halleri
Araha.4965s0004 2.0kb upstream 2.0kb upstream 2000 false Scaffold4965: 32004-34003 Arabidopsis halleri
Araha.4965s0004 2.0kb downstream 2.0kb downstream 3365 true Scaffold4965: 28639-32003 Arabidopsis halleri
Araha.4965s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold4965: 28639-30638 Arabidopsis halleri
Araha.4965s0004 5.0kb upstream 5.0kb upstream 6365 true Scaffold4965: 30639-37003 Arabidopsis halleri
Araha.4965s0004 5.0kb upstream 5.0kb upstream 5000 false Scaffold4965: 32004-37003 Arabidopsis halleri
Araha.4965s0004 5.0kb downstream 5.0kb downstream 6365 true Scaffold4965: 25639-32003 Arabidopsis halleri
Araha.4965s0004 5.0kb downstream 5.0kb downstream 5000 false Scaffold4965: 25639-30638 Arabidopsis halleri
Araha.4965s0004 10.0kb upstream 10.0kb upstream 11365 true Scaffold4965: 30639-42003 Arabidopsis halleri
Araha.4965s0004 10.0kb upstream 10.0kb upstream 10000 false Scaffold4965: 32004-42003 Arabidopsis halleri
Araha.4965s0004 10.0kb downstream 10.0kb downstream 11365 true Scaffold4965: 20639-32003 Arabidopsis halleri
Araha.4965s0004 10.0kb downstream 10.0kb downstream 10000 false Scaffold4965: 20639-30638 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360303 5261 Brassicaceae View MSA
123835033 5264 Brassicales-Malvales View MSA
124338719 5266 SBM View MSA
124238315 5268 Malvidae View MSA
124061268 5270 Rosid View MSA
123742807 5271 Pentapetalae View MSA
122787280 5272 Eudicot View MSA
122043726 5273 Angiosperm View MSA
121349010 5274 Embryophyte View MSA
123424511 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain