Gene : Araha.10508s0002 A. halleri v1.1
Defline:  (1 of 3) PTHR31843:SF2 - ALLENE OXIDE CYCLASE 1, CHLOROPLASTIC-RELATED Genomic Order:  2
Name:  ? Araha.10508s0002 Secondary Identifier:  ? PAC:28855911
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ahalleri PWY-735 Arabidopsis halleri pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.10508s0002 0.5kb upstream 0.5kb upstream 1615 true Scaffold10508: 4819-6433 Arabidopsis halleri
Araha.10508s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold10508: 5934-6433 Arabidopsis halleri
Araha.10508s0002 0.5kb downstream 0.5kb downstream 1615 true Scaffold10508: 4319-5933 Arabidopsis halleri
Araha.10508s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold10508: 4319-4818 Arabidopsis halleri
Araha.10508s0002 1.0kb upstream 1.0kb upstream 2115 true Scaffold10508: 4819-6933 Arabidopsis halleri
Araha.10508s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold10508: 5934-6933 Arabidopsis halleri
Araha.10508s0002 1.0kb downstream 1.0kb downstream 2115 true Scaffold10508: 3819-5933 Arabidopsis halleri
Araha.10508s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold10508: 3819-4818 Arabidopsis halleri
Araha.10508s0002 2.0kb upstream 2.0kb upstream 3115 true Scaffold10508: 4819-7933 Arabidopsis halleri
Araha.10508s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold10508: 5934-7933 Arabidopsis halleri
Araha.10508s0002 2.0kb downstream 2.0kb downstream 3115 true Scaffold10508: 2819-5933 Arabidopsis halleri
Araha.10508s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold10508: 2819-4818 Arabidopsis halleri
Araha.10508s0002 5.0kb upstream 5.0kb upstream 6115 true Scaffold10508: 4819-10933 Arabidopsis halleri
Araha.10508s0002 5.0kb upstream 5.0kb upstream 5000 false Scaffold10508: 5934-10933 Arabidopsis halleri
Araha.10508s0002 5.0kb downstream 5.0kb downstream 5933 true Scaffold10508: 1-5933 Arabidopsis halleri
Araha.10508s0002 5.0kb downstream 5.0kb downstream 4818 false Scaffold10508: 1-4818 Arabidopsis halleri
Araha.10508s0002 10.0kb upstream 10.0kb upstream 9486 true Scaffold10508: 4819-14304 Arabidopsis halleri
Araha.10508s0002 10.0kb upstream 10.0kb upstream 8371 false Scaffold10508: 5934-14304 Arabidopsis halleri
Araha.10508s0002 10.0kb downstream 10.0kb downstream 5933 true Scaffold10508: 1-5933 Arabidopsis halleri
Araha.10508s0002 10.0kb downstream 10.0kb downstream 4818 false Scaffold10508: 1-4818 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122327633 5261 Brassicaceae View MSA
123769046 5264 Brassicales-Malvales View MSA
124267621 5266 SBM View MSA
124123923 5268 Malvidae View MSA
123853020 5270 Rosid View MSA
123739753 5271 Pentapetalae View MSA
122789032 5272 Eudicot View MSA
122045897 5273 Angiosperm View MSA
121350459 5274 Embryophyte View MSA
123426138 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain