Gene : Araha.6808s0001 A. halleri v1.1
Defline:  (1 of 1) PTHR11777:SF14 - ALANINE--TRNA LIGASE, CHLOROPLASTIC-RELATED Genomic Order:  1
Name:  ? Araha.6808s0001 Secondary Identifier:  ? PAC:28855299
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ahalleri TRNA-CHARGING-PWY Arabidopsis halleri pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.6808s0001 0.5kb upstream 0.5kb upstream 3816 true Scaffold6808: 399-4214 Arabidopsis halleri
Araha.6808s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold6808: 3715-4214 Arabidopsis halleri
Araha.6808s0001 0.5kb downstream 0.5kb downstream 3714 true Scaffold6808: 1-3714 Arabidopsis halleri
Araha.6808s0001 0.5kb downstream 0.5kb downstream 398 false Scaffold6808: 1-398 Arabidopsis halleri
Araha.6808s0001 1.0kb upstream 1.0kb upstream 4316 true Scaffold6808: 399-4714 Arabidopsis halleri
Araha.6808s0001 1.0kb upstream 1.0kb upstream 1000 false Scaffold6808: 3715-4714 Arabidopsis halleri
Araha.6808s0001 1.0kb downstream 1.0kb downstream 3714 true Scaffold6808: 1-3714 Arabidopsis halleri
Araha.6808s0001 1.0kb downstream 1.0kb downstream 398 false Scaffold6808: 1-398 Arabidopsis halleri
Araha.6808s0001 2.0kb upstream 2.0kb upstream 5316 true Scaffold6808: 399-5714 Arabidopsis halleri
Araha.6808s0001 2.0kb upstream 2.0kb upstream 2000 false Scaffold6808: 3715-5714 Arabidopsis halleri
Araha.6808s0001 2.0kb downstream 2.0kb downstream 3714 true Scaffold6808: 1-3714 Arabidopsis halleri
Araha.6808s0001 2.0kb downstream 2.0kb downstream 398 false Scaffold6808: 1-398 Arabidopsis halleri
Araha.6808s0001 5.0kb upstream 5.0kb upstream 8316 true Scaffold6808: 399-8714 Arabidopsis halleri
Araha.6808s0001 5.0kb upstream 5.0kb upstream 5000 false Scaffold6808: 3715-8714 Arabidopsis halleri
Araha.6808s0001 5.0kb downstream 5.0kb downstream 3714 true Scaffold6808: 1-3714 Arabidopsis halleri
Araha.6808s0001 5.0kb downstream 5.0kb downstream 398 false Scaffold6808: 1-398 Arabidopsis halleri
Araha.6808s0001 10.0kb upstream 10.0kb upstream 13316 true Scaffold6808: 399-13714 Arabidopsis halleri
Araha.6808s0001 10.0kb upstream 10.0kb upstream 10000 false Scaffold6808: 3715-13714 Arabidopsis halleri
Araha.6808s0001 10.0kb downstream 10.0kb downstream 3714 true Scaffold6808: 1-3714 Arabidopsis halleri
Araha.6808s0001 10.0kb downstream 10.0kb downstream 398 false Scaffold6808: 1-398 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361504 5261 Brassicaceae View MSA
123829787 5264 Brassicales-Malvales View MSA
124345364 5266 SBM View MSA
124242500 5268 Malvidae View MSA
124064161 5270 Rosid View MSA
123740814 5271 Pentapetalae View MSA
122788872 5272 Eudicot View MSA
122048095 5273 Angiosperm View MSA
121348703 5274 Embryophyte View MSA
123425032 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain