Gene : Araha.5970s0002 A. halleri v1.1
Defline:  (1 of 4) 2.3.3.1 - Citrate (Si)-synthase / Citrate oxaloacetate-lyase ((pro-3S)-CH(2)COO->acetyl-CoA) Genomic Order:  2
Name:  ? Araha.5970s0002 Secondary Identifier:  ? PAC:28858875
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5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ahalleri GLYOXYLATE-BYPASS Arabidopsis halleri pathologic  
Ahalleri PWY-5464 Arabidopsis halleri pathologic  
Ahalleri PWY-561 Arabidopsis halleri pathologic  
Ahalleri PWY-5690 Arabidopsis halleri pathologic  
Ahalleri PWY-6549 Arabidopsis halleri pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.5970s0002 0.5kb upstream 0.5kb upstream 3786 true Scaffold5970: 3981-7766 Arabidopsis halleri
Araha.5970s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold5970: 3981-4480 Arabidopsis halleri
Araha.5970s0002 0.5kb downstream 0.5kb downstream 3786 true Scaffold5970: 4481-8266 Arabidopsis halleri
Araha.5970s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold5970: 7767-8266 Arabidopsis halleri
Araha.5970s0002 1.0kb upstream 1.0kb upstream 4286 true Scaffold5970: 3481-7766 Arabidopsis halleri
Araha.5970s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold5970: 3481-4480 Arabidopsis halleri
Araha.5970s0002 1.0kb downstream 1.0kb downstream 4286 true Scaffold5970: 4481-8766 Arabidopsis halleri
Araha.5970s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold5970: 7767-8766 Arabidopsis halleri
Araha.5970s0002 2.0kb upstream 2.0kb upstream 5286 true Scaffold5970: 2481-7766 Arabidopsis halleri
Araha.5970s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold5970: 2481-4480 Arabidopsis halleri
Araha.5970s0002 2.0kb downstream 2.0kb downstream 5286 true Scaffold5970: 4481-9766 Arabidopsis halleri
Araha.5970s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold5970: 7767-9766 Arabidopsis halleri
Araha.5970s0002 5.0kb upstream 5.0kb upstream 7766 true Scaffold5970: 1-7766 Arabidopsis halleri
Araha.5970s0002 5.0kb upstream 5.0kb upstream 4480 false Scaffold5970: 1-4480 Arabidopsis halleri
Araha.5970s0002 5.0kb downstream 5.0kb downstream 8286 true Scaffold5970: 4481-12766 Arabidopsis halleri
Araha.5970s0002 5.0kb downstream 5.0kb downstream 5000 false Scaffold5970: 7767-12766 Arabidopsis halleri
Araha.5970s0002 10.0kb upstream 10.0kb upstream 7766 true Scaffold5970: 1-7766 Arabidopsis halleri
Araha.5970s0002 10.0kb upstream 10.0kb upstream 4480 false Scaffold5970: 1-4480 Arabidopsis halleri
Araha.5970s0002 10.0kb downstream 10.0kb downstream 13286 true Scaffold5970: 4481-17766 Arabidopsis halleri
Araha.5970s0002 10.0kb downstream 10.0kb downstream 10000 false Scaffold5970: 7767-17766 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373975 5261 Brassicaceae View MSA
123836656 5264 Brassicales-Malvales View MSA
124345629 5266 SBM View MSA
124251480 5268 Malvidae View MSA
124065792 5270 Rosid View MSA
123748183 5271 Pentapetalae View MSA
122794190 5272 Eudicot View MSA
122044026 5273 Angiosperm View MSA
121344650 5274 Embryophyte View MSA
123424100 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain