Gene : Araha.12544s0005 A. halleri v1.1
Defline:  (1 of 1) PTHR13789:SF207 - LYCOPENE EPSILON CYCLASE, CHLOROPLASTIC Genomic Order:  5
Name:  ? Araha.12544s0005 Secondary Identifier:  ? PAC:28861672
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ahalleri CAROTENOID-PWY Arabidopsis halleri pathologic  
Ahalleri PWY-5175 Arabidopsis halleri pathologic  
Ahalleri PWY-5946 Arabidopsis halleri pathologic  

Genomics

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Expression

Correlated Expression Displayer

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.12544s0005 0.5kb upstream 0.5kb upstream 3353 true Scaffold12544: 23387-26739 Arabidopsis halleri
Araha.12544s0005 0.5kb upstream 0.5kb upstream 500 false Scaffold12544: 26240-26739 Arabidopsis halleri
Araha.12544s0005 0.5kb downstream 0.5kb downstream 3353 true Scaffold12544: 22887-26239 Arabidopsis halleri
Araha.12544s0005 0.5kb downstream 0.5kb downstream 500 false Scaffold12544: 22887-23386 Arabidopsis halleri
Araha.12544s0005 1.0kb upstream 1.0kb upstream 3853 true Scaffold12544: 23387-27239 Arabidopsis halleri
Araha.12544s0005 1.0kb upstream 1.0kb upstream 1000 false Scaffold12544: 26240-27239 Arabidopsis halleri
Araha.12544s0005 1.0kb downstream 1.0kb downstream 3853 true Scaffold12544: 22387-26239 Arabidopsis halleri
Araha.12544s0005 1.0kb downstream 1.0kb downstream 1000 false Scaffold12544: 22387-23386 Arabidopsis halleri
Araha.12544s0005 2.0kb upstream 2.0kb upstream 4853 true Scaffold12544: 23387-28239 Arabidopsis halleri
Araha.12544s0005 2.0kb upstream 2.0kb upstream 2000 false Scaffold12544: 26240-28239 Arabidopsis halleri
Araha.12544s0005 2.0kb downstream 2.0kb downstream 4853 true Scaffold12544: 21387-26239 Arabidopsis halleri
Araha.12544s0005 2.0kb downstream 2.0kb downstream 2000 false Scaffold12544: 21387-23386 Arabidopsis halleri
Araha.12544s0005 5.0kb upstream 5.0kb upstream 7853 true Scaffold12544: 23387-31239 Arabidopsis halleri
Araha.12544s0005 5.0kb upstream 5.0kb upstream 5000 false Scaffold12544: 26240-31239 Arabidopsis halleri
Araha.12544s0005 5.0kb downstream 5.0kb downstream 7853 true Scaffold12544: 18387-26239 Arabidopsis halleri
Araha.12544s0005 5.0kb downstream 5.0kb downstream 5000 false Scaffold12544: 18387-23386 Arabidopsis halleri
Araha.12544s0005 10.0kb upstream 10.0kb upstream 12853 true Scaffold12544: 23387-36239 Arabidopsis halleri
Araha.12544s0005 10.0kb upstream 10.0kb upstream 10000 false Scaffold12544: 26240-36239 Arabidopsis halleri
Araha.12544s0005 10.0kb downstream 10.0kb downstream 12853 true Scaffold12544: 13387-26239 Arabidopsis halleri
Araha.12544s0005 10.0kb downstream 10.0kb downstream 10000 false Scaffold12544: 13387-23386 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379674 5261 Brassicaceae View MSA
123834922 5264 Brassicales-Malvales View MSA
124342530 5266 SBM View MSA
124243060 5268 Malvidae View MSA
124068333 5270 Rosid View MSA
123739919 5271 Pentapetalae View MSA
122791667 5272 Eudicot View MSA
122041543 5273 Angiosperm View MSA
121345455 5274 Embryophyte View MSA
123424108 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain