Gene : Araha.12648s0003 A. halleri v1.1
Defline:  (1 of 1) PTHR12998:SF0 - TRNA:M(4)X MODIFICATION ENZYME TRM13 HOMOLOG Genomic Order:  3
Name:  ? Araha.12648s0003 Secondary Identifier:  ? PAC:28847439
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ahalleri PWY-6829 Arabidopsis halleri pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.12648s0003 0.5kb upstream 0.5kb upstream 3105 true Scaffold12648: 25475-28579 Arabidopsis halleri
Araha.12648s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold12648: 28080-28579 Arabidopsis halleri
Araha.12648s0003 0.5kb downstream 0.5kb downstream 3105 true Scaffold12648: 24975-28079 Arabidopsis halleri
Araha.12648s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold12648: 24975-25474 Arabidopsis halleri
Araha.12648s0003 1.0kb upstream 1.0kb upstream 3605 true Scaffold12648: 25475-29079 Arabidopsis halleri
Araha.12648s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold12648: 28080-29079 Arabidopsis halleri
Araha.12648s0003 1.0kb downstream 1.0kb downstream 3605 true Scaffold12648: 24475-28079 Arabidopsis halleri
Araha.12648s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold12648: 24475-25474 Arabidopsis halleri
Araha.12648s0003 2.0kb upstream 2.0kb upstream 4605 true Scaffold12648: 25475-30079 Arabidopsis halleri
Araha.12648s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold12648: 28080-30079 Arabidopsis halleri
Araha.12648s0003 2.0kb downstream 2.0kb downstream 4605 true Scaffold12648: 23475-28079 Arabidopsis halleri
Araha.12648s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold12648: 23475-25474 Arabidopsis halleri
Araha.12648s0003 5.0kb upstream 5.0kb upstream 7605 true Scaffold12648: 25475-33079 Arabidopsis halleri
Araha.12648s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold12648: 28080-33079 Arabidopsis halleri
Araha.12648s0003 5.0kb downstream 5.0kb downstream 7605 true Scaffold12648: 20475-28079 Arabidopsis halleri
Araha.12648s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold12648: 20475-25474 Arabidopsis halleri
Araha.12648s0003 10.0kb upstream 10.0kb upstream 12605 true Scaffold12648: 25475-38079 Arabidopsis halleri
Araha.12648s0003 10.0kb upstream 10.0kb upstream 10000 false Scaffold12648: 28080-38079 Arabidopsis halleri
Araha.12648s0003 10.0kb downstream 10.0kb downstream 12605 true Scaffold12648: 15475-28079 Arabidopsis halleri
Araha.12648s0003 10.0kb downstream 10.0kb downstream 10000 false Scaffold12648: 15475-25474 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366038 5261 Brassicaceae View MSA
123828827 5264 Brassicales-Malvales View MSA
124336653 5266 SBM View MSA
124240790 5268 Malvidae View MSA
124062140 5270 Rosid View MSA
123739890 5271 Pentapetalae View MSA
122785784 5272 Eudicot View MSA
122046541 5273 Angiosperm View MSA
121347915 5274 Embryophyte View MSA
123424709 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain