Gene : Araha.13956s0003 A. halleri v1.1
Defline:  (1 of 3) 2.5.1.19 - 3-phosphoshikimate 1-carboxyvinyltransferase / EPSP synthase Genomic Order:  3
Name:  ? Araha.13956s0003 Secondary Identifier:  ? PAC:28860579
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ahalleri ARO-PWY Arabidopsis halleri pathologic  
Ahalleri PWY-6163 Arabidopsis halleri pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.13956s0003 0.5kb upstream 0.5kb upstream 2694 true Scaffold13956: 18955-21648 Arabidopsis halleri
Araha.13956s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold13956: 18955-19454 Arabidopsis halleri
Araha.13956s0003 0.5kb downstream 0.5kb downstream 2694 true Scaffold13956: 19455-22148 Arabidopsis halleri
Araha.13956s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold13956: 21649-22148 Arabidopsis halleri
Araha.13956s0003 1.0kb upstream 1.0kb upstream 3194 true Scaffold13956: 18455-21648 Arabidopsis halleri
Araha.13956s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold13956: 18455-19454 Arabidopsis halleri
Araha.13956s0003 1.0kb downstream 1.0kb downstream 3194 true Scaffold13956: 19455-22648 Arabidopsis halleri
Araha.13956s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold13956: 21649-22648 Arabidopsis halleri
Araha.13956s0003 2.0kb upstream 2.0kb upstream 4194 true Scaffold13956: 17455-21648 Arabidopsis halleri
Araha.13956s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold13956: 17455-19454 Arabidopsis halleri
Araha.13956s0003 2.0kb downstream 2.0kb downstream 4194 true Scaffold13956: 19455-23648 Arabidopsis halleri
Araha.13956s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold13956: 21649-23648 Arabidopsis halleri
Araha.13956s0003 5.0kb upstream 5.0kb upstream 7194 true Scaffold13956: 14455-21648 Arabidopsis halleri
Araha.13956s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold13956: 14455-19454 Arabidopsis halleri
Araha.13956s0003 5.0kb downstream 5.0kb downstream 7194 true Scaffold13956: 19455-26648 Arabidopsis halleri
Araha.13956s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold13956: 21649-26648 Arabidopsis halleri
Araha.13956s0003 10.0kb upstream 10.0kb upstream 12194 true Scaffold13956: 9455-21648 Arabidopsis halleri
Araha.13956s0003 10.0kb upstream 10.0kb upstream 10000 false Scaffold13956: 9455-19454 Arabidopsis halleri
Araha.13956s0003 10.0kb downstream 10.0kb downstream 12194 true Scaffold13956: 19455-31648 Arabidopsis halleri
Araha.13956s0003 10.0kb downstream 10.0kb downstream 10000 false Scaffold13956: 21649-31648 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122332027 5261 Brassicaceae View MSA
123773145 5264 Brassicales-Malvales View MSA
124271643 5266 SBM View MSA
124127610 5268 Malvidae View MSA
123856441 5270 Rosid View MSA
123442367 5271 Pentapetalae View MSA
122477945 5272 Eudicot View MSA
122041964 5273 Angiosperm View MSA
121345789 5274 Embryophyte View MSA
123424749 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain