Gene : Araha.17843s0001 A. halleri v1.1
Defline:  (1 of 2) PTHR11451:SF37 - PROTEIN EARS-1 Genomic Order:  1
Name:  ? Araha.17843s0001 Secondary Identifier:  ? PAC:28845645
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ahalleri PWY-5188 Arabidopsis halleri pathologic  
Ahalleri PWY-5918 Arabidopsis halleri pathologic  
Ahalleri TRNA-CHARGING-PWY Arabidopsis halleri pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.17843s0001 0.5kb upstream 0.5kb upstream 2243 true Scaffold17843: 1-2243 Arabidopsis halleri
Araha.17843s0001 0.5kb upstream 0.5kb upstream 2 false Scaffold17843: 1-2 Arabidopsis halleri
Araha.17843s0001 0.5kb downstream 0.5kb downstream 2741 true Scaffold17843: 3-2743 Arabidopsis halleri
Araha.17843s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold17843: 2244-2743 Arabidopsis halleri
Araha.17843s0001 1.0kb upstream 1.0kb upstream 2243 true Scaffold17843: 1-2243 Arabidopsis halleri
Araha.17843s0001 1.0kb upstream 1.0kb upstream 2 false Scaffold17843: 1-2 Arabidopsis halleri
Araha.17843s0001 1.0kb downstream 1.0kb downstream 3241 true Scaffold17843: 3-3243 Arabidopsis halleri
Araha.17843s0001 1.0kb downstream 1.0kb downstream 1000 false Scaffold17843: 2244-3243 Arabidopsis halleri
Araha.17843s0001 2.0kb upstream 2.0kb upstream 2243 true Scaffold17843: 1-2243 Arabidopsis halleri
Araha.17843s0001 2.0kb upstream 2.0kb upstream 2 false Scaffold17843: 1-2 Arabidopsis halleri
Araha.17843s0001 2.0kb downstream 2.0kb downstream 4241 true Scaffold17843: 3-4243 Arabidopsis halleri
Araha.17843s0001 2.0kb downstream 2.0kb downstream 2000 false Scaffold17843: 2244-4243 Arabidopsis halleri
Araha.17843s0001 5.0kb upstream 5.0kb upstream 2243 true Scaffold17843: 1-2243 Arabidopsis halleri
Araha.17843s0001 5.0kb upstream 5.0kb upstream 2 false Scaffold17843: 1-2 Arabidopsis halleri
Araha.17843s0001 5.0kb downstream 5.0kb downstream 7241 true Scaffold17843: 3-7243 Arabidopsis halleri
Araha.17843s0001 5.0kb downstream 5.0kb downstream 5000 false Scaffold17843: 2244-7243 Arabidopsis halleri
Araha.17843s0001 10.0kb upstream 10.0kb upstream 2243 true Scaffold17843: 1-2243 Arabidopsis halleri
Araha.17843s0001 10.0kb upstream 10.0kb upstream 2 false Scaffold17843: 1-2 Arabidopsis halleri
Araha.17843s0001 10.0kb downstream 10.0kb downstream 11317 true Scaffold17843: 3-11319 Arabidopsis halleri
Araha.17843s0001 10.0kb downstream 10.0kb downstream 9076 false Scaffold17843: 2244-11319 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121484709 5273 Angiosperm Singleton cluster - no MSA
122318425 5261 Brassicaceae Singleton cluster - no MSA
123760025 5264 Brassicales-Malvales Singleton cluster - no MSA
124258660 5266 SBM Singleton cluster - no MSA
124115283 5268 Malvidae Singleton cluster - no MSA
123844675 5270 Rosid Singleton cluster - no MSA
123430957 5271 Pentapetalae Singleton cluster - no MSA
122466578 5272 Eudicot Singleton cluster - no MSA
120758104 5274 Embryophyte Singleton cluster - no MSA
122800564 5275 Viridiplantae Singleton cluster - no MSA

0 Rna Seq Expressions

0 Strain