Gene : Araha.18696s0009 A. halleri v1.1
Defline:  (1 of 3) PTHR10314:SF110 - CYSTEINE SYNTHASE Genomic Order:  9
Name:  ? Araha.18696s0009 Secondary Identifier:  ? PAC:28855357
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ahalleri CYSTSYN-PWY Arabidopsis halleri pathologic  
Ahalleri PWY-6936 Arabidopsis halleri pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.18696s0009 0.5kb upstream 0.5kb upstream 3859 true Scaffold18696: 36010-39868 Arabidopsis halleri
Araha.18696s0009 0.5kb upstream 0.5kb upstream 500 false Scaffold18696: 39369-39868 Arabidopsis halleri
Araha.18696s0009 0.5kb downstream 0.5kb downstream 3859 true Scaffold18696: 35510-39368 Arabidopsis halleri
Araha.18696s0009 0.5kb downstream 0.5kb downstream 500 false Scaffold18696: 35510-36009 Arabidopsis halleri
Araha.18696s0009 1.0kb upstream 1.0kb upstream 4359 true Scaffold18696: 36010-40368 Arabidopsis halleri
Araha.18696s0009 1.0kb upstream 1.0kb upstream 1000 false Scaffold18696: 39369-40368 Arabidopsis halleri
Araha.18696s0009 1.0kb downstream 1.0kb downstream 4359 true Scaffold18696: 35010-39368 Arabidopsis halleri
Araha.18696s0009 1.0kb downstream 1.0kb downstream 1000 false Scaffold18696: 35010-36009 Arabidopsis halleri
Araha.18696s0009 2.0kb upstream 2.0kb upstream 5359 true Scaffold18696: 36010-41368 Arabidopsis halleri
Araha.18696s0009 2.0kb upstream 2.0kb upstream 2000 false Scaffold18696: 39369-41368 Arabidopsis halleri
Araha.18696s0009 2.0kb downstream 2.0kb downstream 5359 true Scaffold18696: 34010-39368 Arabidopsis halleri
Araha.18696s0009 2.0kb downstream 2.0kb downstream 2000 false Scaffold18696: 34010-36009 Arabidopsis halleri
Araha.18696s0009 5.0kb upstream 5.0kb upstream 8359 true Scaffold18696: 36010-44368 Arabidopsis halleri
Araha.18696s0009 5.0kb upstream 5.0kb upstream 5000 false Scaffold18696: 39369-44368 Arabidopsis halleri
Araha.18696s0009 5.0kb downstream 5.0kb downstream 8359 true Scaffold18696: 31010-39368 Arabidopsis halleri
Araha.18696s0009 5.0kb downstream 5.0kb downstream 5000 false Scaffold18696: 31010-36009 Arabidopsis halleri
Araha.18696s0009 10.0kb upstream 10.0kb upstream 13359 true Scaffold18696: 36010-49368 Arabidopsis halleri
Araha.18696s0009 10.0kb upstream 10.0kb upstream 10000 false Scaffold18696: 39369-49368 Arabidopsis halleri
Araha.18696s0009 10.0kb downstream 10.0kb downstream 13359 true Scaffold18696: 26010-39368 Arabidopsis halleri
Araha.18696s0009 10.0kb downstream 10.0kb downstream 10000 false Scaffold18696: 26010-36009 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368674 5261 Brassicaceae View MSA
123836685 5264 Brassicales-Malvales View MSA
124342961 5266 SBM View MSA
124246015 5268 Malvidae View MSA
124073485 5270 Rosid View MSA
123750353 5271 Pentapetalae View MSA
122787082 5272 Eudicot View MSA
122044204 5273 Angiosperm View MSA
121350970 5274 Embryophyte View MSA
123424805 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain