Gene : Araha.19888s0003 A. halleri v1.1
Defline:  (1 of 1) PTHR34195:SF2 - PHOTOSYSTEM I REACTION CENTER SUBUNIT PSAK, CHLOROPLASTIC Genomic Order:  3
Name:  ? Araha.19888s0003 Secondary Identifier:  ? PAC:28839510
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ahalleri PHOTOALL-PWY Arabidopsis halleri pathologic  
Ahalleri PWY-101 Arabidopsis halleri pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.19888s0003 0.5kb upstream 0.5kb upstream 1366 true Scaffold19888: 22963-24328 Arabidopsis halleri
Araha.19888s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold19888: 23829-24328 Arabidopsis halleri
Araha.19888s0003 0.5kb downstream 0.5kb downstream 1366 true Scaffold19888: 22463-23828 Arabidopsis halleri
Araha.19888s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold19888: 22463-22962 Arabidopsis halleri
Araha.19888s0003 1.0kb upstream 1.0kb upstream 1866 true Scaffold19888: 22963-24828 Arabidopsis halleri
Araha.19888s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold19888: 23829-24828 Arabidopsis halleri
Araha.19888s0003 1.0kb downstream 1.0kb downstream 1866 true Scaffold19888: 21963-23828 Arabidopsis halleri
Araha.19888s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold19888: 21963-22962 Arabidopsis halleri
Araha.19888s0003 2.0kb upstream 2.0kb upstream 2866 true Scaffold19888: 22963-25828 Arabidopsis halleri
Araha.19888s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold19888: 23829-25828 Arabidopsis halleri
Araha.19888s0003 2.0kb downstream 2.0kb downstream 2866 true Scaffold19888: 20963-23828 Arabidopsis halleri
Araha.19888s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold19888: 20963-22962 Arabidopsis halleri
Araha.19888s0003 5.0kb upstream 5.0kb upstream 5866 true Scaffold19888: 22963-28828 Arabidopsis halleri
Araha.19888s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold19888: 23829-28828 Arabidopsis halleri
Araha.19888s0003 5.0kb downstream 5.0kb downstream 5866 true Scaffold19888: 17963-23828 Arabidopsis halleri
Araha.19888s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold19888: 17963-22962 Arabidopsis halleri
Araha.19888s0003 10.0kb upstream 10.0kb upstream 10866 true Scaffold19888: 22963-33828 Arabidopsis halleri
Araha.19888s0003 10.0kb upstream 10.0kb upstream 10000 false Scaffold19888: 23829-33828 Arabidopsis halleri
Araha.19888s0003 10.0kb downstream 10.0kb downstream 10866 true Scaffold19888: 12963-23828 Arabidopsis halleri
Araha.19888s0003 10.0kb downstream 10.0kb downstream 10000 false Scaffold19888: 12963-22962 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378578 5261 Brassicaceae View MSA
123833502 5264 Brassicales-Malvales View MSA
124342197 5266 SBM View MSA
124242965 5268 Malvidae View MSA
124064022 5270 Rosid View MSA
123739111 5271 Pentapetalae View MSA
122786435 5272 Eudicot View MSA
122044551 5273 Angiosperm View MSA
121347312 5274 Embryophyte View MSA
123425033 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain