Gene : Araha.25200s0001 A. halleri v1.1
Defline:  (1 of 3) PF00098//PF03732 - Zinc knuckle (zf-CCHC) // Retrotransposon gag protein (Retrotrans_gag) Genomic Order:  1
Name:  ? Araha.25200s0001 Secondary Identifier:  ? PAC:28846894
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20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.25200s0001 0.5kb upstream 0.5kb upstream 1199 true Scaffold25200: 2955-4153 Arabidopsis halleri
Araha.25200s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold25200: 3654-4153 Arabidopsis halleri
Araha.25200s0001 0.5kb downstream 0.5kb downstream 1199 true Scaffold25200: 2455-3653 Arabidopsis halleri
Araha.25200s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold25200: 2455-2954 Arabidopsis halleri
Araha.25200s0001 1.0kb upstream 1.0kb upstream 1699 true Scaffold25200: 2955-4653 Arabidopsis halleri
Araha.25200s0001 1.0kb upstream 1.0kb upstream 1000 false Scaffold25200: 3654-4653 Arabidopsis halleri
Araha.25200s0001 1.0kb downstream 1.0kb downstream 1699 true Scaffold25200: 1955-3653 Arabidopsis halleri
Araha.25200s0001 1.0kb downstream 1.0kb downstream 1000 false Scaffold25200: 1955-2954 Arabidopsis halleri
Araha.25200s0001 2.0kb upstream 2.0kb upstream 2699 true Scaffold25200: 2955-5653 Arabidopsis halleri
Araha.25200s0001 2.0kb upstream 2.0kb upstream 2000 false Scaffold25200: 3654-5653 Arabidopsis halleri
Araha.25200s0001 2.0kb downstream 2.0kb downstream 2699 true Scaffold25200: 955-3653 Arabidopsis halleri
Araha.25200s0001 2.0kb downstream 2.0kb downstream 2000 false Scaffold25200: 955-2954 Arabidopsis halleri
Araha.25200s0001 5.0kb upstream 5.0kb upstream 4638 true Scaffold25200: 2955-7592 Arabidopsis halleri
Araha.25200s0001 5.0kb upstream 5.0kb upstream 3939 false Scaffold25200: 3654-7592 Arabidopsis halleri
Araha.25200s0001 5.0kb downstream 5.0kb downstream 3653 true Scaffold25200: 1-3653 Arabidopsis halleri
Araha.25200s0001 5.0kb downstream 5.0kb downstream 2954 false Scaffold25200: 1-2954 Arabidopsis halleri
Araha.25200s0001 10.0kb upstream 10.0kb upstream 4638 true Scaffold25200: 2955-7592 Arabidopsis halleri
Araha.25200s0001 10.0kb upstream 10.0kb upstream 3939 false Scaffold25200: 3654-7592 Arabidopsis halleri
Araha.25200s0001 10.0kb downstream 10.0kb downstream 3653 true Scaffold25200: 1-3653 Arabidopsis halleri
Araha.25200s0001 10.0kb downstream 10.0kb downstream 2954 false Scaffold25200: 1-2954 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121484938 5273 Angiosperm Singleton cluster - no MSA
122318655 5261 Brassicaceae Singleton cluster - no MSA
123760255 5264 Brassicales-Malvales Singleton cluster - no MSA
124258890 5266 SBM Singleton cluster - no MSA
124115513 5268 Malvidae Singleton cluster - no MSA
123844905 5270 Rosid Singleton cluster - no MSA
123431186 5271 Pentapetalae Singleton cluster - no MSA
122466807 5272 Eudicot Singleton cluster - no MSA
120758332 5274 Embryophyte Singleton cluster - no MSA
122800792 5275 Viridiplantae Singleton cluster - no MSA

0 Rna Seq Expressions

0 Strain