Gene : Araha.25486s0004 A. halleri v1.1
Defline:  (1 of 2) PTHR13301:SF33 - CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 1 [UDP-FORMING] Genomic Order:  4
Name:  ? Araha.25486s0004 Secondary Identifier:  ? PAC:28845520
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ahalleri PWY-1001 Arabidopsis halleri pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.25486s0004 0.5kb upstream 0.5kb upstream 5518 true Scaffold25486: 11277-16794 Arabidopsis halleri
Araha.25486s0004 0.5kb upstream 0.5kb upstream 500 false Scaffold25486: 16295-16794 Arabidopsis halleri
Araha.25486s0004 0.5kb downstream 0.5kb downstream 5518 true Scaffold25486: 10777-16294 Arabidopsis halleri
Araha.25486s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold25486: 10777-11276 Arabidopsis halleri
Araha.25486s0004 1.0kb upstream 1.0kb upstream 6018 true Scaffold25486: 11277-17294 Arabidopsis halleri
Araha.25486s0004 1.0kb upstream 1.0kb upstream 1000 false Scaffold25486: 16295-17294 Arabidopsis halleri
Araha.25486s0004 1.0kb downstream 1.0kb downstream 6018 true Scaffold25486: 10277-16294 Arabidopsis halleri
Araha.25486s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold25486: 10277-11276 Arabidopsis halleri
Araha.25486s0004 2.0kb upstream 2.0kb upstream 7018 true Scaffold25486: 11277-18294 Arabidopsis halleri
Araha.25486s0004 2.0kb upstream 2.0kb upstream 2000 false Scaffold25486: 16295-18294 Arabidopsis halleri
Araha.25486s0004 2.0kb downstream 2.0kb downstream 7018 true Scaffold25486: 9277-16294 Arabidopsis halleri
Araha.25486s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold25486: 9277-11276 Arabidopsis halleri
Araha.25486s0004 5.0kb upstream 5.0kb upstream 10018 true Scaffold25486: 11277-21294 Arabidopsis halleri
Araha.25486s0004 5.0kb upstream 5.0kb upstream 5000 false Scaffold25486: 16295-21294 Arabidopsis halleri
Araha.25486s0004 5.0kb downstream 5.0kb downstream 10018 true Scaffold25486: 6277-16294 Arabidopsis halleri
Araha.25486s0004 5.0kb downstream 5.0kb downstream 5000 false Scaffold25486: 6277-11276 Arabidopsis halleri
Araha.25486s0004 10.0kb upstream 10.0kb upstream 15018 true Scaffold25486: 11277-26294 Arabidopsis halleri
Araha.25486s0004 10.0kb upstream 10.0kb upstream 10000 false Scaffold25486: 16295-26294 Arabidopsis halleri
Araha.25486s0004 10.0kb downstream 10.0kb downstream 15018 true Scaffold25486: 1277-16294 Arabidopsis halleri
Araha.25486s0004 10.0kb downstream 10.0kb downstream 10000 false Scaffold25486: 1277-11276 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376380 5261 Brassicaceae View MSA
123827599 5264 Brassicales-Malvales View MSA
124350218 5266 SBM View MSA
124240162 5268 Malvidae View MSA
124068602 5270 Rosid View MSA
123746424 5271 Pentapetalae View MSA
122793475 5272 Eudicot View MSA
122046929 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain