Gene : Araha.27996s0001 A. halleri v1.1
Defline:  (1 of 2) PTHR10314:SF125 - THREONINE SYNTHASE 2, CHLOROPLASTIC Genomic Order:  1
Name:  ? Araha.27996s0001 Secondary Identifier:  ? PAC:28848432
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ahalleri HOMOSER-THRESYN-PWY Arabidopsis halleri pathologic  
Ahalleri PWY-3001 Arabidopsis halleri pathologic  
Ahalleri PWY-724 Arabidopsis halleri pathologic  
Ahalleri THRESYN-PWY Arabidopsis halleri pathologic  

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.27996s0001 0.5kb upstream 0.5kb upstream 1839 true Scaffold27996: 278-2116 Arabidopsis halleri
Araha.27996s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold27996: 1617-2116 Arabidopsis halleri
Araha.27996s0001 0.5kb downstream 0.5kb downstream 1616 true Scaffold27996: 1-1616 Arabidopsis halleri
Araha.27996s0001 0.5kb downstream 0.5kb downstream 277 false Scaffold27996: 1-277 Arabidopsis halleri
Araha.27996s0001 1.0kb upstream 1.0kb upstream 2339 true Scaffold27996: 278-2616 Arabidopsis halleri
Araha.27996s0001 1.0kb upstream 1.0kb upstream 1000 false Scaffold27996: 1617-2616 Arabidopsis halleri
Araha.27996s0001 1.0kb downstream 1.0kb downstream 1616 true Scaffold27996: 1-1616 Arabidopsis halleri
Araha.27996s0001 1.0kb downstream 1.0kb downstream 277 false Scaffold27996: 1-277 Arabidopsis halleri
Araha.27996s0001 2.0kb upstream 2.0kb upstream 3339 true Scaffold27996: 278-3616 Arabidopsis halleri
Araha.27996s0001 2.0kb upstream 2.0kb upstream 2000 false Scaffold27996: 1617-3616 Arabidopsis halleri
Araha.27996s0001 2.0kb downstream 2.0kb downstream 1616 true Scaffold27996: 1-1616 Arabidopsis halleri
Araha.27996s0001 2.0kb downstream 2.0kb downstream 277 false Scaffold27996: 1-277 Arabidopsis halleri
Araha.27996s0001 5.0kb upstream 5.0kb upstream 6339 true Scaffold27996: 278-6616 Arabidopsis halleri
Araha.27996s0001 5.0kb upstream 5.0kb upstream 5000 false Scaffold27996: 1617-6616 Arabidopsis halleri
Araha.27996s0001 5.0kb downstream 5.0kb downstream 1616 true Scaffold27996: 1-1616 Arabidopsis halleri
Araha.27996s0001 5.0kb downstream 5.0kb downstream 277 false Scaffold27996: 1-277 Arabidopsis halleri
Araha.27996s0001 10.0kb upstream 10.0kb upstream 11339 true Scaffold27996: 278-11616 Arabidopsis halleri
Araha.27996s0001 10.0kb upstream 10.0kb upstream 10000 false Scaffold27996: 1617-11616 Arabidopsis halleri
Araha.27996s0001 10.0kb downstream 10.0kb downstream 1616 true Scaffold27996: 1-1616 Arabidopsis halleri
Araha.27996s0001 10.0kb downstream 10.0kb downstream 277 false Scaffold27996: 1-277 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041159 5273 Angiosperm View MSA
122375349 5261 Brassicaceae View MSA
123800935 5264 Brassicales-Malvales View MSA
124298290 5266 SBM View MSA
124251759 5268 Malvidae View MSA
124069376 5270 Rosid View MSA
123748441 5271 Pentapetalae View MSA
122786729 5272 Eudicot View MSA
121349368 5274 Embryophyte View MSA
123424940 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain