Gene : Araha.38982s0001 A. halleri v1.1
Defline:  (1 of 11) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  1
Name:  ? Araha.38982s0001 Secondary Identifier:  ? PAC:28863135
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.38982s0001 0.5kb upstream 0.5kb upstream 879 true Scaffold38982: 20-898 Arabidopsis halleri
Araha.38982s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold38982: 399-898 Arabidopsis halleri
Araha.38982s0001 0.5kb downstream 0.5kb downstream 398 true Scaffold38982: 1-398 Arabidopsis halleri
Araha.38982s0001 0.5kb downstream 0.5kb downstream 19 false Scaffold38982: 1-19 Arabidopsis halleri
Araha.38982s0001 1.0kb upstream 1.0kb upstream 1010 true Scaffold38982: 20-1029 Arabidopsis halleri
Araha.38982s0001 1.0kb upstream 1.0kb upstream 631 false Scaffold38982: 399-1029 Arabidopsis halleri
Araha.38982s0001 1.0kb downstream 1.0kb downstream 398 true Scaffold38982: 1-398 Arabidopsis halleri
Araha.38982s0001 1.0kb downstream 1.0kb downstream 19 false Scaffold38982: 1-19 Arabidopsis halleri
Araha.38982s0001 2.0kb upstream 2.0kb upstream 1010 true Scaffold38982: 20-1029 Arabidopsis halleri
Araha.38982s0001 2.0kb upstream 2.0kb upstream 631 false Scaffold38982: 399-1029 Arabidopsis halleri
Araha.38982s0001 2.0kb downstream 2.0kb downstream 398 true Scaffold38982: 1-398 Arabidopsis halleri
Araha.38982s0001 2.0kb downstream 2.0kb downstream 19 false Scaffold38982: 1-19 Arabidopsis halleri
Araha.38982s0001 5.0kb upstream 5.0kb upstream 1010 true Scaffold38982: 20-1029 Arabidopsis halleri
Araha.38982s0001 5.0kb upstream 5.0kb upstream 631 false Scaffold38982: 399-1029 Arabidopsis halleri
Araha.38982s0001 5.0kb downstream 5.0kb downstream 398 true Scaffold38982: 1-398 Arabidopsis halleri
Araha.38982s0001 5.0kb downstream 5.0kb downstream 19 false Scaffold38982: 1-19 Arabidopsis halleri
Araha.38982s0001 10.0kb upstream 10.0kb upstream 1010 true Scaffold38982: 20-1029 Arabidopsis halleri
Araha.38982s0001 10.0kb upstream 10.0kb upstream 631 false Scaffold38982: 399-1029 Arabidopsis halleri
Araha.38982s0001 10.0kb downstream 10.0kb downstream 398 true Scaffold38982: 1-398 Arabidopsis halleri
Araha.38982s0001 10.0kb downstream 10.0kb downstream 19 false Scaffold38982: 1-19 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376328 5261 Brassicaceae View MSA
123839959 5264 Brassicales-Malvales View MSA
124345918 5266 SBM View MSA
124248769 5268 Malvidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain