Gene : Araha.45010s0001 A. halleri v1.1
Defline:  (1 of 3) PTHR31843:SF2 - ALLENE OXIDE CYCLASE 1, CHLOROPLASTIC-RELATED Genomic Order:  1
Name:  ? Araha.45010s0001 Secondary Identifier:  ? PAC:28839061
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ahalleri PWY-735 Arabidopsis halleri pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.45010s0001 0.5kb upstream 0.5kb upstream 1582 true Scaffold45010: 1667-3248 Arabidopsis halleri
Araha.45010s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold45010: 2749-3248 Arabidopsis halleri
Araha.45010s0001 0.5kb downstream 0.5kb downstream 1582 true Scaffold45010: 1167-2748 Arabidopsis halleri
Araha.45010s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold45010: 1167-1666 Arabidopsis halleri
Araha.45010s0001 1.0kb upstream 1.0kb upstream 2082 true Scaffold45010: 1667-3748 Arabidopsis halleri
Araha.45010s0001 1.0kb upstream 1.0kb upstream 1000 false Scaffold45010: 2749-3748 Arabidopsis halleri
Araha.45010s0001 1.0kb downstream 1.0kb downstream 2082 true Scaffold45010: 667-2748 Arabidopsis halleri
Araha.45010s0001 1.0kb downstream 1.0kb downstream 1000 false Scaffold45010: 667-1666 Arabidopsis halleri
Araha.45010s0001 2.0kb upstream 2.0kb upstream 3082 true Scaffold45010: 1667-4748 Arabidopsis halleri
Araha.45010s0001 2.0kb upstream 2.0kb upstream 2000 false Scaffold45010: 2749-4748 Arabidopsis halleri
Araha.45010s0001 2.0kb downstream 2.0kb downstream 2748 true Scaffold45010: 1-2748 Arabidopsis halleri
Araha.45010s0001 2.0kb downstream 2.0kb downstream 1666 false Scaffold45010: 1-1666 Arabidopsis halleri
Araha.45010s0001 5.0kb upstream 5.0kb upstream 5700 true Scaffold45010: 1667-7366 Arabidopsis halleri
Araha.45010s0001 5.0kb upstream 5.0kb upstream 4618 false Scaffold45010: 2749-7366 Arabidopsis halleri
Araha.45010s0001 5.0kb downstream 5.0kb downstream 2748 true Scaffold45010: 1-2748 Arabidopsis halleri
Araha.45010s0001 5.0kb downstream 5.0kb downstream 1666 false Scaffold45010: 1-1666 Arabidopsis halleri
Araha.45010s0001 10.0kb upstream 10.0kb upstream 5700 true Scaffold45010: 1667-7366 Arabidopsis halleri
Araha.45010s0001 10.0kb upstream 10.0kb upstream 4618 false Scaffold45010: 2749-7366 Arabidopsis halleri
Araha.45010s0001 10.0kb downstream 10.0kb downstream 2748 true Scaffold45010: 1-2748 Arabidopsis halleri
Araha.45010s0001 10.0kb downstream 10.0kb downstream 1666 false Scaffold45010: 1-1666 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380510 5261 Brassicaceae View MSA
123828498 5264 Brassicales-Malvales View MSA
124339249 5266 SBM View MSA
124252758 5268 Malvidae View MSA
124066771 5270 Rosid View MSA
123739753 5271 Pentapetalae View MSA
122789032 5272 Eudicot View MSA
122045897 5273 Angiosperm View MSA
121350459 5274 Embryophyte View MSA
123426138 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain