Gene : Cagra.0448s0002 C. grandiflora v1.1
Defline:  (1 of 2) PTHR23315:SF69 - U-BOX DOMAIN-CONTAINING PROTEIN 12-RELATED Genomic Order:  2
Name:  ? Cagra.0448s0002 Secondary Identifier:  ? PAC:28906317
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7511 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0448s0002 0.5kb upstream 0.5kb upstream 3674 true Scaffold448: 4311-7984 Capsella grandiflora
Cagra.0448s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold448: 7485-7984 Capsella grandiflora
Cagra.0448s0002 0.5kb downstream 0.5kb downstream 3674 true Scaffold448: 3811-7484 Capsella grandiflora
Cagra.0448s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold448: 3811-4310 Capsella grandiflora
Cagra.0448s0002 1.0kb upstream 1.0kb upstream 4174 true Scaffold448: 4311-8484 Capsella grandiflora
Cagra.0448s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold448: 7485-8484 Capsella grandiflora
Cagra.0448s0002 1.0kb downstream 1.0kb downstream 4174 true Scaffold448: 3311-7484 Capsella grandiflora
Cagra.0448s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold448: 3311-4310 Capsella grandiflora
Cagra.0448s0002 2.0kb upstream 2.0kb upstream 5174 true Scaffold448: 4311-9484 Capsella grandiflora
Cagra.0448s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold448: 7485-9484 Capsella grandiflora
Cagra.0448s0002 2.0kb downstream 2.0kb downstream 5174 true Scaffold448: 2311-7484 Capsella grandiflora
Cagra.0448s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold448: 2311-4310 Capsella grandiflora
Cagra.0448s0002 5.0kb upstream 5.0kb upstream 8174 true Scaffold448: 4311-12484 Capsella grandiflora
Cagra.0448s0002 5.0kb upstream 5.0kb upstream 5000 false Scaffold448: 7485-12484 Capsella grandiflora
Cagra.0448s0002 5.0kb downstream 5.0kb downstream 7484 true Scaffold448: 1-7484 Capsella grandiflora
Cagra.0448s0002 5.0kb downstream 5.0kb downstream 4310 false Scaffold448: 1-4310 Capsella grandiflora
Cagra.0448s0002 10.0kb upstream 10.0kb upstream 13174 true Scaffold448: 4311-17484 Capsella grandiflora
Cagra.0448s0002 10.0kb upstream 10.0kb upstream 10000 false Scaffold448: 7485-17484 Capsella grandiflora
Cagra.0448s0002 10.0kb downstream 10.0kb downstream 7484 true Scaffold448: 1-7484 Capsella grandiflora
Cagra.0448s0002 10.0kb downstream 10.0kb downstream 4310 false Scaffold448: 1-4310 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027848 5273 Angiosperm View MSA
124063850 5270 Rosid View MSA
122365315 5261 Brassicaceae View MSA
123827412 5264 Brassicales-Malvales View MSA
124342810 5266 SBM View MSA
124240381 5268 Malvidae View MSA
123736546 5271 Pentapetalae View MSA
122787346 5272 Eudicot View MSA
121349135 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain