Gene : Cagra.0062s0041 C. grandiflora v1.1
Defline:  (1 of 1) 4.6.1.12 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / MECDP-synthase Genomic Order:  41
Name:  ? Cagra.0062s0041 Secondary Identifier:  ? PAC:28893931
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7560 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0062s0041 0.5kb upstream 0.5kb upstream 2180 true Scaffold62: 148754-150933 Capsella grandiflora
Cagra.0062s0041 0.5kb upstream 0.5kb upstream 500 false Scaffold62: 148754-149253 Capsella grandiflora
Cagra.0062s0041 0.5kb downstream 0.5kb downstream 2180 true Scaffold62: 149254-151433 Capsella grandiflora
Cagra.0062s0041 0.5kb downstream 0.5kb downstream 500 false Scaffold62: 150934-151433 Capsella grandiflora
Cagra.0062s0041 1.0kb upstream 1.0kb upstream 2680 true Scaffold62: 148254-150933 Capsella grandiflora
Cagra.0062s0041 1.0kb upstream 1.0kb upstream 1000 false Scaffold62: 148254-149253 Capsella grandiflora
Cagra.0062s0041 1.0kb downstream 1.0kb downstream 2680 true Scaffold62: 149254-151933 Capsella grandiflora
Cagra.0062s0041 1.0kb downstream 1.0kb downstream 1000 false Scaffold62: 150934-151933 Capsella grandiflora
Cagra.0062s0041 2.0kb upstream 2.0kb upstream 3680 true Scaffold62: 147254-150933 Capsella grandiflora
Cagra.0062s0041 2.0kb upstream 2.0kb upstream 2000 false Scaffold62: 147254-149253 Capsella grandiflora
Cagra.0062s0041 2.0kb downstream 2.0kb downstream 3680 true Scaffold62: 149254-152933 Capsella grandiflora
Cagra.0062s0041 2.0kb downstream 2.0kb downstream 2000 false Scaffold62: 150934-152933 Capsella grandiflora
Cagra.0062s0041 5.0kb upstream 5.0kb upstream 6680 true Scaffold62: 144254-150933 Capsella grandiflora
Cagra.0062s0041 5.0kb upstream 5.0kb upstream 5000 false Scaffold62: 144254-149253 Capsella grandiflora
Cagra.0062s0041 5.0kb downstream 5.0kb downstream 6680 true Scaffold62: 149254-155933 Capsella grandiflora
Cagra.0062s0041 5.0kb downstream 5.0kb downstream 5000 false Scaffold62: 150934-155933 Capsella grandiflora
Cagra.0062s0041 10.0kb upstream 10.0kb upstream 11680 true Scaffold62: 139254-150933 Capsella grandiflora
Cagra.0062s0041 10.0kb upstream 10.0kb upstream 10000 false Scaffold62: 139254-149253 Capsella grandiflora
Cagra.0062s0041 10.0kb downstream 10.0kb downstream 11680 true Scaffold62: 149254-160933 Capsella grandiflora
Cagra.0062s0041 10.0kb downstream 10.0kb downstream 10000 false Scaffold62: 150934-160933 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365152 5261 Brassicaceae View MSA
123835150 5264 Brassicales-Malvales View MSA
124346414 5266 SBM View MSA
124238483 5268 Malvidae View MSA
124062148 5270 Rosid View MSA
123737612 5271 Pentapetalae View MSA
122786124 5272 Eudicot View MSA
122042234 5273 Angiosperm View MSA
121344039 5274 Embryophyte View MSA
123423768 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain