Gene : Cagra.0077s0011 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11850:SF100 - HOMEOBOX PROTEIN SHOOT MERISTEMLESS Genomic Order:  11
Name:  ? Cagra.0077s0011 Secondary Identifier:  ? PAC:28915919
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0077s0011 0.5kb upstream 0.5kb upstream 2712 true Scaffold77: 66397-69108 Capsella grandiflora
Cagra.0077s0011 0.5kb upstream 0.5kb upstream 500 false Scaffold77: 66397-66896 Capsella grandiflora
Cagra.0077s0011 0.5kb downstream 0.5kb downstream 2712 true Scaffold77: 66897-69608 Capsella grandiflora
Cagra.0077s0011 0.5kb downstream 0.5kb downstream 500 false Scaffold77: 69109-69608 Capsella grandiflora
Cagra.0077s0011 1.0kb upstream 1.0kb upstream 3212 true Scaffold77: 65897-69108 Capsella grandiflora
Cagra.0077s0011 1.0kb upstream 1.0kb upstream 1000 false Scaffold77: 65897-66896 Capsella grandiflora
Cagra.0077s0011 1.0kb downstream 1.0kb downstream 3212 true Scaffold77: 66897-70108 Capsella grandiflora
Cagra.0077s0011 1.0kb downstream 1.0kb downstream 1000 false Scaffold77: 69109-70108 Capsella grandiflora
Cagra.0077s0011 2.0kb upstream 2.0kb upstream 4212 true Scaffold77: 64897-69108 Capsella grandiflora
Cagra.0077s0011 2.0kb upstream 2.0kb upstream 2000 false Scaffold77: 64897-66896 Capsella grandiflora
Cagra.0077s0011 2.0kb downstream 2.0kb downstream 4212 true Scaffold77: 66897-71108 Capsella grandiflora
Cagra.0077s0011 2.0kb downstream 2.0kb downstream 2000 false Scaffold77: 69109-71108 Capsella grandiflora
Cagra.0077s0011 5.0kb upstream 5.0kb upstream 7212 true Scaffold77: 61897-69108 Capsella grandiflora
Cagra.0077s0011 5.0kb upstream 5.0kb upstream 5000 false Scaffold77: 61897-66896 Capsella grandiflora
Cagra.0077s0011 5.0kb downstream 5.0kb downstream 7212 true Scaffold77: 66897-74108 Capsella grandiflora
Cagra.0077s0011 5.0kb downstream 5.0kb downstream 5000 false Scaffold77: 69109-74108 Capsella grandiflora
Cagra.0077s0011 10.0kb upstream 10.0kb upstream 12212 true Scaffold77: 56897-69108 Capsella grandiflora
Cagra.0077s0011 10.0kb upstream 10.0kb upstream 10000 false Scaffold77: 56897-66896 Capsella grandiflora
Cagra.0077s0011 10.0kb downstream 10.0kb downstream 12212 true Scaffold77: 66897-79108 Capsella grandiflora
Cagra.0077s0011 10.0kb downstream 10.0kb downstream 10000 false Scaffold77: 69109-79108 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122334296 5261 Brassicaceae Singleton cluster - no MSA
123775154 5264 Brassicales-Malvales Singleton cluster - no MSA
124273568 5266 SBM Singleton cluster - no MSA
124129164 5268 Malvidae Singleton cluster - no MSA
124072037 5270 Rosid View MSA
123750536 5271 Pentapetalae View MSA
122794934 5272 Eudicot View MSA
122051072 5273 Angiosperm View MSA
121351483 5274 Embryophyte View MSA
123428758 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain