Gene : Cagra.0086s0007 C. grandiflora v1.1
Defline:  (1 of 2) PTHR13343:SF13 - PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-LIKE PROTEIN Genomic Order:  7
Name:  ? Cagra.0086s0007 Secondary Identifier:  ? PAC:28918451
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0086s0007 0.5kb upstream 0.5kb upstream 4436 true Scaffold86: 18171-22606 Capsella grandiflora
Cagra.0086s0007 0.5kb upstream 0.5kb upstream 500 false Scaffold86: 18171-18670 Capsella grandiflora
Cagra.0086s0007 0.5kb downstream 0.5kb downstream 4436 true Scaffold86: 18671-23106 Capsella grandiflora
Cagra.0086s0007 0.5kb downstream 0.5kb downstream 500 false Scaffold86: 22607-23106 Capsella grandiflora
Cagra.0086s0007 1.0kb upstream 1.0kb upstream 4936 true Scaffold86: 17671-22606 Capsella grandiflora
Cagra.0086s0007 1.0kb upstream 1.0kb upstream 1000 false Scaffold86: 17671-18670 Capsella grandiflora
Cagra.0086s0007 1.0kb downstream 1.0kb downstream 4936 true Scaffold86: 18671-23606 Capsella grandiflora
Cagra.0086s0007 1.0kb downstream 1.0kb downstream 1000 false Scaffold86: 22607-23606 Capsella grandiflora
Cagra.0086s0007 2.0kb upstream 2.0kb upstream 5936 true Scaffold86: 16671-22606 Capsella grandiflora
Cagra.0086s0007 2.0kb upstream 2.0kb upstream 2000 false Scaffold86: 16671-18670 Capsella grandiflora
Cagra.0086s0007 2.0kb downstream 2.0kb downstream 5936 true Scaffold86: 18671-24606 Capsella grandiflora
Cagra.0086s0007 2.0kb downstream 2.0kb downstream 2000 false Scaffold86: 22607-24606 Capsella grandiflora
Cagra.0086s0007 5.0kb upstream 5.0kb upstream 8936 true Scaffold86: 13671-22606 Capsella grandiflora
Cagra.0086s0007 5.0kb upstream 5.0kb upstream 5000 false Scaffold86: 13671-18670 Capsella grandiflora
Cagra.0086s0007 5.0kb downstream 5.0kb downstream 8936 true Scaffold86: 18671-27606 Capsella grandiflora
Cagra.0086s0007 5.0kb downstream 5.0kb downstream 5000 false Scaffold86: 22607-27606 Capsella grandiflora
Cagra.0086s0007 10.0kb upstream 10.0kb upstream 13936 true Scaffold86: 8671-22606 Capsella grandiflora
Cagra.0086s0007 10.0kb upstream 10.0kb upstream 10000 false Scaffold86: 8671-18670 Capsella grandiflora
Cagra.0086s0007 10.0kb downstream 10.0kb downstream 13936 true Scaffold86: 18671-32606 Capsella grandiflora
Cagra.0086s0007 10.0kb downstream 10.0kb downstream 10000 false Scaffold86: 22607-32606 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363810 5261 Brassicaceae View MSA
123836782 5264 Brassicales-Malvales View MSA
124341056 5266 SBM View MSA
124252927 5268 Malvidae View MSA
124066138 5270 Rosid View MSA
123741710 5271 Pentapetalae View MSA
122789997 5272 Eudicot View MSA
122050575 5273 Angiosperm View MSA
121348228 5274 Embryophyte View MSA
123380781 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain