Gene : Cagra.0086s0055 C. grandiflora v1.1
Defline:  (1 of 2) 2.7.1.138 - Ceramide kinase / Acylsphingosine kinase Genomic Order:  55
Name:  ? Cagra.0086s0055 Secondary Identifier:  ? PAC:28918445
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5129 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0086s0055 0.5kb upstream 0.5kb upstream 5410 true Scaffold86: 214448-219857 Capsella grandiflora
Cagra.0086s0055 0.5kb upstream 0.5kb upstream 500 false Scaffold86: 214448-214947 Capsella grandiflora
Cagra.0086s0055 0.5kb downstream 0.5kb downstream 5410 true Scaffold86: 214948-220357 Capsella grandiflora
Cagra.0086s0055 0.5kb downstream 0.5kb downstream 500 false Scaffold86: 219858-220357 Capsella grandiflora
Cagra.0086s0055 1.0kb upstream 1.0kb upstream 5910 true Scaffold86: 213948-219857 Capsella grandiflora
Cagra.0086s0055 1.0kb upstream 1.0kb upstream 1000 false Scaffold86: 213948-214947 Capsella grandiflora
Cagra.0086s0055 1.0kb downstream 1.0kb downstream 5910 true Scaffold86: 214948-220857 Capsella grandiflora
Cagra.0086s0055 1.0kb downstream 1.0kb downstream 1000 false Scaffold86: 219858-220857 Capsella grandiflora
Cagra.0086s0055 2.0kb upstream 2.0kb upstream 6910 true Scaffold86: 212948-219857 Capsella grandiflora
Cagra.0086s0055 2.0kb upstream 2.0kb upstream 2000 false Scaffold86: 212948-214947 Capsella grandiflora
Cagra.0086s0055 2.0kb downstream 2.0kb downstream 6910 true Scaffold86: 214948-221857 Capsella grandiflora
Cagra.0086s0055 2.0kb downstream 2.0kb downstream 2000 false Scaffold86: 219858-221857 Capsella grandiflora
Cagra.0086s0055 5.0kb upstream 5.0kb upstream 9910 true Scaffold86: 209948-219857 Capsella grandiflora
Cagra.0086s0055 5.0kb upstream 5.0kb upstream 5000 false Scaffold86: 209948-214947 Capsella grandiflora
Cagra.0086s0055 5.0kb downstream 5.0kb downstream 9910 true Scaffold86: 214948-224857 Capsella grandiflora
Cagra.0086s0055 5.0kb downstream 5.0kb downstream 5000 false Scaffold86: 219858-224857 Capsella grandiflora
Cagra.0086s0055 10.0kb upstream 10.0kb upstream 14910 true Scaffold86: 204948-219857 Capsella grandiflora
Cagra.0086s0055 10.0kb upstream 10.0kb upstream 10000 false Scaffold86: 204948-214947 Capsella grandiflora
Cagra.0086s0055 10.0kb downstream 10.0kb downstream 14910 true Scaffold86: 214948-229857 Capsella grandiflora
Cagra.0086s0055 10.0kb downstream 10.0kb downstream 10000 false Scaffold86: 219858-229857 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363319 5261 Brassicaceae View MSA
123836450 5264 Brassicales-Malvales View MSA
124345813 5266 SBM View MSA
124254227 5268 Malvidae View MSA
124074924 5270 Rosid View MSA
123752126 5271 Pentapetalae View MSA
122793643 5272 Eudicot View MSA
122046814 5273 Angiosperm View MSA
121349004 5274 Embryophyte View MSA
123428396 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain