Gene : Cagra.0056s0004 C. grandiflora v1.1
Defline:  (1 of 3) PF00122//PF00403//PF12710 - E1-E2 ATPase (E1-E2_ATPase) // Heavy-metal-associated domain (HMA) // haloacid dehalogenase-like hydrolase (HAD) Genomic Order:  4
Name:  ? Cagra.0056s0004 Secondary Identifier:  ? PAC:28903254
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0056s0004 0.5kb upstream 0.5kb upstream 6619 true Scaffold56: 6871-13489 Capsella grandiflora
Cagra.0056s0004 0.5kb upstream 0.5kb upstream 500 false Scaffold56: 6871-7370 Capsella grandiflora
Cagra.0056s0004 0.5kb downstream 0.5kb downstream 6619 true Scaffold56: 7371-13989 Capsella grandiflora
Cagra.0056s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold56: 13490-13989 Capsella grandiflora
Cagra.0056s0004 1.0kb upstream 1.0kb upstream 7119 true Scaffold56: 6371-13489 Capsella grandiflora
Cagra.0056s0004 1.0kb upstream 1.0kb upstream 1000 false Scaffold56: 6371-7370 Capsella grandiflora
Cagra.0056s0004 1.0kb downstream 1.0kb downstream 7119 true Scaffold56: 7371-14489 Capsella grandiflora
Cagra.0056s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold56: 13490-14489 Capsella grandiflora
Cagra.0056s0004 2.0kb upstream 2.0kb upstream 8119 true Scaffold56: 5371-13489 Capsella grandiflora
Cagra.0056s0004 2.0kb upstream 2.0kb upstream 2000 false Scaffold56: 5371-7370 Capsella grandiflora
Cagra.0056s0004 2.0kb downstream 2.0kb downstream 8119 true Scaffold56: 7371-15489 Capsella grandiflora
Cagra.0056s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold56: 13490-15489 Capsella grandiflora
Cagra.0056s0004 5.0kb upstream 5.0kb upstream 11119 true Scaffold56: 2371-13489 Capsella grandiflora
Cagra.0056s0004 5.0kb upstream 5.0kb upstream 5000 false Scaffold56: 2371-7370 Capsella grandiflora
Cagra.0056s0004 5.0kb downstream 5.0kb downstream 11119 true Scaffold56: 7371-18489 Capsella grandiflora
Cagra.0056s0004 5.0kb downstream 5.0kb downstream 5000 false Scaffold56: 13490-18489 Capsella grandiflora
Cagra.0056s0004 10.0kb upstream 10.0kb upstream 13489 true Scaffold56: 1-13489 Capsella grandiflora
Cagra.0056s0004 10.0kb upstream 10.0kb upstream 7370 false Scaffold56: 1-7370 Capsella grandiflora
Cagra.0056s0004 10.0kb downstream 10.0kb downstream 16119 true Scaffold56: 7371-23489 Capsella grandiflora
Cagra.0056s0004 10.0kb downstream 10.0kb downstream 10000 false Scaffold56: 13490-23489 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374018 5261 Brassicaceae View MSA
123830382 5264 Brassicales-Malvales View MSA
124337799 5266 SBM View MSA
124242606 5268 Malvidae View MSA
124065227 5270 Rosid View MSA
123737112 5271 Pentapetalae View MSA
122796910 5272 Eudicot View MSA
122047959 5273 Angiosperm View MSA
121350289 5274 Embryophyte View MSA
123427971 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain