Gene : Cagra.0050s0087 C. grandiflora v1.1
Defline:  (1 of 2) 2.1.2.11 - 3-methyl-2-oxobutanoate hydroxymethyltransferase / Ketopantoate hydroxymethyltransferase Genomic Order:  87
Name:  ? Cagra.0050s0087 Secondary Identifier:  ? PAC:28916955
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PANTO-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0050s0087 0.5kb upstream 0.5kb upstream 2439 true Scaffold50: 352958-355396 Capsella grandiflora
Cagra.0050s0087 0.5kb upstream 0.5kb upstream 500 false Scaffold50: 352958-353457 Capsella grandiflora
Cagra.0050s0087 0.5kb downstream 0.5kb downstream 2439 true Scaffold50: 353458-355896 Capsella grandiflora
Cagra.0050s0087 0.5kb downstream 0.5kb downstream 500 false Scaffold50: 355397-355896 Capsella grandiflora
Cagra.0050s0087 1.0kb upstream 1.0kb upstream 2939 true Scaffold50: 352458-355396 Capsella grandiflora
Cagra.0050s0087 1.0kb upstream 1.0kb upstream 1000 false Scaffold50: 352458-353457 Capsella grandiflora
Cagra.0050s0087 1.0kb downstream 1.0kb downstream 2939 true Scaffold50: 353458-356396 Capsella grandiflora
Cagra.0050s0087 1.0kb downstream 1.0kb downstream 1000 false Scaffold50: 355397-356396 Capsella grandiflora
Cagra.0050s0087 2.0kb upstream 2.0kb upstream 3939 true Scaffold50: 351458-355396 Capsella grandiflora
Cagra.0050s0087 2.0kb upstream 2.0kb upstream 2000 false Scaffold50: 351458-353457 Capsella grandiflora
Cagra.0050s0087 2.0kb downstream 2.0kb downstream 3939 true Scaffold50: 353458-357396 Capsella grandiflora
Cagra.0050s0087 2.0kb downstream 2.0kb downstream 2000 false Scaffold50: 355397-357396 Capsella grandiflora
Cagra.0050s0087 5.0kb upstream 5.0kb upstream 6939 true Scaffold50: 348458-355396 Capsella grandiflora
Cagra.0050s0087 5.0kb upstream 5.0kb upstream 5000 false Scaffold50: 348458-353457 Capsella grandiflora
Cagra.0050s0087 5.0kb downstream 5.0kb downstream 6939 true Scaffold50: 353458-360396 Capsella grandiflora
Cagra.0050s0087 5.0kb downstream 5.0kb downstream 5000 false Scaffold50: 355397-360396 Capsella grandiflora
Cagra.0050s0087 10.0kb upstream 10.0kb upstream 11939 true Scaffold50: 343458-355396 Capsella grandiflora
Cagra.0050s0087 10.0kb upstream 10.0kb upstream 10000 false Scaffold50: 343458-353457 Capsella grandiflora
Cagra.0050s0087 10.0kb downstream 10.0kb downstream 11939 true Scaffold50: 353458-365396 Capsella grandiflora
Cagra.0050s0087 10.0kb downstream 10.0kb downstream 10000 false Scaffold50: 355397-365396 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368160 5261 Brassicaceae View MSA
123840931 5264 Brassicales-Malvales View MSA
124337427 5266 SBM View MSA
124240313 5268 Malvidae View MSA
124063716 5270 Rosid View MSA
123736873 5271 Pentapetalae View MSA
122793216 5272 Eudicot View MSA
122047605 5273 Angiosperm View MSA
121346037 5274 Embryophyte View MSA
123424122 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain