Gene : Cagra.0050s0089 C. grandiflora v1.1
Defline:  (1 of 1) PTHR12358:SF43 - SPHINGOID LONG-CHAIN BASES KINASE 2, MITOCHONDRIAL Genomic Order:  89
Name:  ? Cagra.0050s0089 Secondary Identifier:  ? PAC:28917053
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7039 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0050s0089 0.5kb upstream 0.5kb upstream 2778 true Scaffold50: 357138-359915 Capsella grandiflora
Cagra.0050s0089 0.5kb upstream 0.5kb upstream 500 false Scaffold50: 359416-359915 Capsella grandiflora
Cagra.0050s0089 0.5kb downstream 0.5kb downstream 2778 true Scaffold50: 356638-359415 Capsella grandiflora
Cagra.0050s0089 0.5kb downstream 0.5kb downstream 500 false Scaffold50: 356638-357137 Capsella grandiflora
Cagra.0050s0089 1.0kb upstream 1.0kb upstream 3278 true Scaffold50: 357138-360415 Capsella grandiflora
Cagra.0050s0089 1.0kb upstream 1.0kb upstream 1000 false Scaffold50: 359416-360415 Capsella grandiflora
Cagra.0050s0089 1.0kb downstream 1.0kb downstream 3278 true Scaffold50: 356138-359415 Capsella grandiflora
Cagra.0050s0089 1.0kb downstream 1.0kb downstream 1000 false Scaffold50: 356138-357137 Capsella grandiflora
Cagra.0050s0089 2.0kb upstream 2.0kb upstream 4278 true Scaffold50: 357138-361415 Capsella grandiflora
Cagra.0050s0089 2.0kb upstream 2.0kb upstream 2000 false Scaffold50: 359416-361415 Capsella grandiflora
Cagra.0050s0089 2.0kb downstream 2.0kb downstream 4278 true Scaffold50: 355138-359415 Capsella grandiflora
Cagra.0050s0089 2.0kb downstream 2.0kb downstream 2000 false Scaffold50: 355138-357137 Capsella grandiflora
Cagra.0050s0089 5.0kb upstream 5.0kb upstream 7278 true Scaffold50: 357138-364415 Capsella grandiflora
Cagra.0050s0089 5.0kb upstream 5.0kb upstream 5000 false Scaffold50: 359416-364415 Capsella grandiflora
Cagra.0050s0089 5.0kb downstream 5.0kb downstream 7278 true Scaffold50: 352138-359415 Capsella grandiflora
Cagra.0050s0089 5.0kb downstream 5.0kb downstream 5000 false Scaffold50: 352138-357137 Capsella grandiflora
Cagra.0050s0089 10.0kb upstream 10.0kb upstream 12278 true Scaffold50: 357138-369415 Capsella grandiflora
Cagra.0050s0089 10.0kb upstream 10.0kb upstream 10000 false Scaffold50: 359416-369415 Capsella grandiflora
Cagra.0050s0089 10.0kb downstream 10.0kb downstream 12278 true Scaffold50: 347138-359415 Capsella grandiflora
Cagra.0050s0089 10.0kb downstream 10.0kb downstream 10000 false Scaffold50: 347138-357137 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379587 5261 Brassicaceae View MSA
123830792 5264 Brassicales-Malvales View MSA
124343149 5266 SBM View MSA
124237255 5268 Malvidae View MSA
124062992 5270 Rosid View MSA
123747106 5271 Pentapetalae View MSA
122789016 5272 Eudicot View MSA
122043667 5273 Angiosperm View MSA
121344203 5274 Embryophyte View MSA
123380000 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain