Gene : Cagra.0050s0104 C. grandiflora v1.1
Defline:  (1 of 6) PTHR22849:SF50 - U-BOX DOMAIN-CONTAINING PROTEIN 36-RELATED Genomic Order:  104
Name:  ? Cagra.0050s0104 Secondary Identifier:  ? PAC:28917069
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7511 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0050s0104 0.5kb upstream 0.5kb upstream 3046 true Scaffold50: 408442-411487 Capsella grandiflora
Cagra.0050s0104 0.5kb upstream 0.5kb upstream 500 false Scaffold50: 410988-411487 Capsella grandiflora
Cagra.0050s0104 0.5kb downstream 0.5kb downstream 3046 true Scaffold50: 407942-410987 Capsella grandiflora
Cagra.0050s0104 0.5kb downstream 0.5kb downstream 500 false Scaffold50: 407942-408441 Capsella grandiflora
Cagra.0050s0104 1.0kb upstream 1.0kb upstream 3546 true Scaffold50: 408442-411987 Capsella grandiflora
Cagra.0050s0104 1.0kb upstream 1.0kb upstream 1000 false Scaffold50: 410988-411987 Capsella grandiflora
Cagra.0050s0104 1.0kb downstream 1.0kb downstream 3546 true Scaffold50: 407442-410987 Capsella grandiflora
Cagra.0050s0104 1.0kb downstream 1.0kb downstream 1000 false Scaffold50: 407442-408441 Capsella grandiflora
Cagra.0050s0104 2.0kb upstream 2.0kb upstream 4546 true Scaffold50: 408442-412987 Capsella grandiflora
Cagra.0050s0104 2.0kb upstream 2.0kb upstream 2000 false Scaffold50: 410988-412987 Capsella grandiflora
Cagra.0050s0104 2.0kb downstream 2.0kb downstream 4546 true Scaffold50: 406442-410987 Capsella grandiflora
Cagra.0050s0104 2.0kb downstream 2.0kb downstream 2000 false Scaffold50: 406442-408441 Capsella grandiflora
Cagra.0050s0104 5.0kb upstream 5.0kb upstream 7546 true Scaffold50: 408442-415987 Capsella grandiflora
Cagra.0050s0104 5.0kb upstream 5.0kb upstream 5000 false Scaffold50: 410988-415987 Capsella grandiflora
Cagra.0050s0104 5.0kb downstream 5.0kb downstream 7546 true Scaffold50: 403442-410987 Capsella grandiflora
Cagra.0050s0104 5.0kb downstream 5.0kb downstream 5000 false Scaffold50: 403442-408441 Capsella grandiflora
Cagra.0050s0104 10.0kb upstream 10.0kb upstream 12546 true Scaffold50: 408442-420987 Capsella grandiflora
Cagra.0050s0104 10.0kb upstream 10.0kb upstream 10000 false Scaffold50: 410988-420987 Capsella grandiflora
Cagra.0050s0104 10.0kb downstream 10.0kb downstream 12546 true Scaffold50: 398442-410987 Capsella grandiflora
Cagra.0050s0104 10.0kb downstream 10.0kb downstream 10000 false Scaffold50: 398442-408441 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028010 5273 Angiosperm View MSA
122343142 5261 Brassicaceae View MSA
123783430 5264 Brassicales-Malvales View MSA
124281665 5266 SBM View MSA
124136383 5268 Malvidae View MSA
124051146 5270 Rosid View MSA
123742120 5271 Pentapetalae View MSA
122770207 5272 Eudicot View MSA
121297566 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain