Gene : Cagra.0084s0059 C. grandiflora v1.1
Defline:  (1 of 1) 2.5.1.16//2.5.1.22 - Spermidine synthase / Putrescine aminopropyltransferase // Spermine synthase / Spermidine aminopropyltransferase Genomic Order:  59
Name:  ? Cagra.0084s0059 Secondary Identifier:  ? PAC:28895393
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora ARGSPECAT-PWY Capsella grandiflora pathologic  
Cgrandiflora BSUBPOLYAMSYN-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-7528 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0084s0059 0.5kb upstream 0.5kb upstream 3696 true Scaffold84: 227623-231318 Capsella grandiflora
Cagra.0084s0059 0.5kb upstream 0.5kb upstream 500 false Scaffold84: 227623-228122 Capsella grandiflora
Cagra.0084s0059 0.5kb downstream 0.5kb downstream 3696 true Scaffold84: 228123-231818 Capsella grandiflora
Cagra.0084s0059 0.5kb downstream 0.5kb downstream 500 false Scaffold84: 231319-231818 Capsella grandiflora
Cagra.0084s0059 1.0kb upstream 1.0kb upstream 4196 true Scaffold84: 227123-231318 Capsella grandiflora
Cagra.0084s0059 1.0kb upstream 1.0kb upstream 1000 false Scaffold84: 227123-228122 Capsella grandiflora
Cagra.0084s0059 1.0kb downstream 1.0kb downstream 4196 true Scaffold84: 228123-232318 Capsella grandiflora
Cagra.0084s0059 1.0kb downstream 1.0kb downstream 1000 false Scaffold84: 231319-232318 Capsella grandiflora
Cagra.0084s0059 2.0kb upstream 2.0kb upstream 5196 true Scaffold84: 226123-231318 Capsella grandiflora
Cagra.0084s0059 2.0kb upstream 2.0kb upstream 2000 false Scaffold84: 226123-228122 Capsella grandiflora
Cagra.0084s0059 2.0kb downstream 2.0kb downstream 5196 true Scaffold84: 228123-233318 Capsella grandiflora
Cagra.0084s0059 2.0kb downstream 2.0kb downstream 2000 false Scaffold84: 231319-233318 Capsella grandiflora
Cagra.0084s0059 5.0kb upstream 5.0kb upstream 8196 true Scaffold84: 223123-231318 Capsella grandiflora
Cagra.0084s0059 5.0kb upstream 5.0kb upstream 5000 false Scaffold84: 223123-228122 Capsella grandiflora
Cagra.0084s0059 5.0kb downstream 5.0kb downstream 8196 true Scaffold84: 228123-236318 Capsella grandiflora
Cagra.0084s0059 5.0kb downstream 5.0kb downstream 5000 false Scaffold84: 231319-236318 Capsella grandiflora
Cagra.0084s0059 10.0kb upstream 10.0kb upstream 13196 true Scaffold84: 218123-231318 Capsella grandiflora
Cagra.0084s0059 10.0kb upstream 10.0kb upstream 10000 false Scaffold84: 218123-228122 Capsella grandiflora
Cagra.0084s0059 10.0kb downstream 10.0kb downstream 13196 true Scaffold84: 228123-241318 Capsella grandiflora
Cagra.0084s0059 10.0kb downstream 10.0kb downstream 10000 false Scaffold84: 231319-241318 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374357 5261 Brassicaceae View MSA
123829244 5264 Brassicales-Malvales View MSA
124341220 5266 SBM View MSA
124251479 5268 Malvidae View MSA
124062886 5270 Rosid View MSA
123739892 5271 Pentapetalae View MSA
122785821 5272 Eudicot View MSA
122045666 5273 Angiosperm View MSA
121310481 5274 Embryophyte View MSA
123347953 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain