Gene : Cagra.0026s0059 C. grandiflora v1.1
Defline:  (1 of 1) PTHR23270//PTHR23270:SF9 - PROGRAMMED CELL DEATH PROTEIN 11 PRE-RRNA PROCESSING PROTEIN RRP5 Genomic Order:  59
Name:  ? Cagra.0026s0059 Secondary Identifier:  ? PAC:28919749
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0026s0059 0.5kb upstream 0.5kb upstream 2836 true Scaffold26: 248014-250849 Capsella grandiflora
Cagra.0026s0059 0.5kb upstream 0.5kb upstream 500 false Scaffold26: 248014-248513 Capsella grandiflora
Cagra.0026s0059 0.5kb downstream 0.5kb downstream 2836 true Scaffold26: 248514-251349 Capsella grandiflora
Cagra.0026s0059 0.5kb downstream 0.5kb downstream 500 false Scaffold26: 250850-251349 Capsella grandiflora
Cagra.0026s0059 1.0kb upstream 1.0kb upstream 3336 true Scaffold26: 247514-250849 Capsella grandiflora
Cagra.0026s0059 1.0kb upstream 1.0kb upstream 1000 false Scaffold26: 247514-248513 Capsella grandiflora
Cagra.0026s0059 1.0kb downstream 1.0kb downstream 3336 true Scaffold26: 248514-251849 Capsella grandiflora
Cagra.0026s0059 1.0kb downstream 1.0kb downstream 1000 false Scaffold26: 250850-251849 Capsella grandiflora
Cagra.0026s0059 2.0kb upstream 2.0kb upstream 4336 true Scaffold26: 246514-250849 Capsella grandiflora
Cagra.0026s0059 2.0kb upstream 2.0kb upstream 2000 false Scaffold26: 246514-248513 Capsella grandiflora
Cagra.0026s0059 2.0kb downstream 2.0kb downstream 4336 true Scaffold26: 248514-252849 Capsella grandiflora
Cagra.0026s0059 2.0kb downstream 2.0kb downstream 2000 false Scaffold26: 250850-252849 Capsella grandiflora
Cagra.0026s0059 5.0kb upstream 5.0kb upstream 7336 true Scaffold26: 243514-250849 Capsella grandiflora
Cagra.0026s0059 5.0kb upstream 5.0kb upstream 5000 false Scaffold26: 243514-248513 Capsella grandiflora
Cagra.0026s0059 5.0kb downstream 5.0kb downstream 7336 true Scaffold26: 248514-255849 Capsella grandiflora
Cagra.0026s0059 5.0kb downstream 5.0kb downstream 5000 false Scaffold26: 250850-255849 Capsella grandiflora
Cagra.0026s0059 10.0kb upstream 10.0kb upstream 12336 true Scaffold26: 238514-250849 Capsella grandiflora
Cagra.0026s0059 10.0kb upstream 10.0kb upstream 10000 false Scaffold26: 238514-248513 Capsella grandiflora
Cagra.0026s0059 10.0kb downstream 10.0kb downstream 12336 true Scaffold26: 248514-260849 Capsella grandiflora
Cagra.0026s0059 10.0kb downstream 10.0kb downstream 10000 false Scaffold26: 250850-260849 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361979 5261 Brassicaceae View MSA
123834907 5264 Brassicales-Malvales View MSA
124339157 5266 SBM View MSA
124237979 5268 Malvidae View MSA
124064090 5270 Rosid View MSA
123737111 5271 Pentapetalae View MSA
122791346 5272 Eudicot View MSA
122043466 5273 Angiosperm View MSA
121344790 5274 Embryophyte View MSA
123423896 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain