Gene : Cagra.0027s0010 C. grandiflora v1.1
Defline:  (1 of 3) PTHR22953:SF47 - PURPLE ACID PHOSPHATASE 11-RELATED Genomic Order:  10
Name:  ? Cagra.0027s0010 Secondary Identifier:  ? PAC:28895755
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5083 Capsella grandiflora pathologic  
Cgrandiflora PWY-6348 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0027s0010 0.5kb upstream 0.5kb upstream 2325 true Scaffold27: 30410-32734 Capsella grandiflora
Cagra.0027s0010 0.5kb upstream 0.5kb upstream 500 false Scaffold27: 30410-30909 Capsella grandiflora
Cagra.0027s0010 0.5kb downstream 0.5kb downstream 2325 true Scaffold27: 30910-33234 Capsella grandiflora
Cagra.0027s0010 0.5kb downstream 0.5kb downstream 500 false Scaffold27: 32735-33234 Capsella grandiflora
Cagra.0027s0010 1.0kb upstream 1.0kb upstream 2825 true Scaffold27: 29910-32734 Capsella grandiflora
Cagra.0027s0010 1.0kb upstream 1.0kb upstream 1000 false Scaffold27: 29910-30909 Capsella grandiflora
Cagra.0027s0010 1.0kb downstream 1.0kb downstream 2825 true Scaffold27: 30910-33734 Capsella grandiflora
Cagra.0027s0010 1.0kb downstream 1.0kb downstream 1000 false Scaffold27: 32735-33734 Capsella grandiflora
Cagra.0027s0010 2.0kb upstream 2.0kb upstream 3825 true Scaffold27: 28910-32734 Capsella grandiflora
Cagra.0027s0010 2.0kb upstream 2.0kb upstream 2000 false Scaffold27: 28910-30909 Capsella grandiflora
Cagra.0027s0010 2.0kb downstream 2.0kb downstream 3825 true Scaffold27: 30910-34734 Capsella grandiflora
Cagra.0027s0010 2.0kb downstream 2.0kb downstream 2000 false Scaffold27: 32735-34734 Capsella grandiflora
Cagra.0027s0010 5.0kb upstream 5.0kb upstream 6825 true Scaffold27: 25910-32734 Capsella grandiflora
Cagra.0027s0010 5.0kb upstream 5.0kb upstream 5000 false Scaffold27: 25910-30909 Capsella grandiflora
Cagra.0027s0010 5.0kb downstream 5.0kb downstream 6825 true Scaffold27: 30910-37734 Capsella grandiflora
Cagra.0027s0010 5.0kb downstream 5.0kb downstream 5000 false Scaffold27: 32735-37734 Capsella grandiflora
Cagra.0027s0010 10.0kb upstream 10.0kb upstream 11825 true Scaffold27: 20910-32734 Capsella grandiflora
Cagra.0027s0010 10.0kb upstream 10.0kb upstream 10000 false Scaffold27: 20910-30909 Capsella grandiflora
Cagra.0027s0010 10.0kb downstream 10.0kb downstream 11825 true Scaffold27: 30910-42734 Capsella grandiflora
Cagra.0027s0010 10.0kb downstream 10.0kb downstream 10000 false Scaffold27: 32735-42734 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367372 5261 Brassicaceae View MSA
123799340 5264 Brassicales-Malvales View MSA
124349813 5266 SBM View MSA
124244573 5268 Malvidae View MSA
123951986 5270 Rosid View MSA
123737494 5271 Pentapetalae View MSA
122792847 5272 Eudicot View MSA
122050360 5273 Angiosperm View MSA
121351600 5274 Embryophyte View MSA
123426131 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain