Gene : Cagra.0084s0039 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11817:SF2 - PLASTIDIAL PYRUVATE KINASE 2 Genomic Order:  39
Name:  ? Cagra.0084s0039 Secondary Identifier:  ? PAC:28895345
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora ANAEROFRUCAT-PWY Capsella grandiflora pathologic  
Cgrandiflora ANAGLYCOLYSIS-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-1042 Capsella grandiflora pathologic  
Cgrandiflora PWY-5464 Capsella grandiflora pathologic  
Cgrandiflora PWY-5723 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0084s0039 0.5kb upstream 0.5kb upstream 4004 true Scaffold84: 169083-173086 Capsella grandiflora
Cagra.0084s0039 0.5kb upstream 0.5kb upstream 500 false Scaffold84: 169083-169582 Capsella grandiflora
Cagra.0084s0039 0.5kb downstream 0.5kb downstream 4004 true Scaffold84: 169583-173586 Capsella grandiflora
Cagra.0084s0039 0.5kb downstream 0.5kb downstream 500 false Scaffold84: 173087-173586 Capsella grandiflora
Cagra.0084s0039 1.0kb upstream 1.0kb upstream 4504 true Scaffold84: 168583-173086 Capsella grandiflora
Cagra.0084s0039 1.0kb upstream 1.0kb upstream 1000 false Scaffold84: 168583-169582 Capsella grandiflora
Cagra.0084s0039 1.0kb downstream 1.0kb downstream 4504 true Scaffold84: 169583-174086 Capsella grandiflora
Cagra.0084s0039 1.0kb downstream 1.0kb downstream 1000 false Scaffold84: 173087-174086 Capsella grandiflora
Cagra.0084s0039 2.0kb upstream 2.0kb upstream 5504 true Scaffold84: 167583-173086 Capsella grandiflora
Cagra.0084s0039 2.0kb upstream 2.0kb upstream 2000 false Scaffold84: 167583-169582 Capsella grandiflora
Cagra.0084s0039 2.0kb downstream 2.0kb downstream 5504 true Scaffold84: 169583-175086 Capsella grandiflora
Cagra.0084s0039 2.0kb downstream 2.0kb downstream 2000 false Scaffold84: 173087-175086 Capsella grandiflora
Cagra.0084s0039 5.0kb upstream 5.0kb upstream 8504 true Scaffold84: 164583-173086 Capsella grandiflora
Cagra.0084s0039 5.0kb upstream 5.0kb upstream 5000 false Scaffold84: 164583-169582 Capsella grandiflora
Cagra.0084s0039 5.0kb downstream 5.0kb downstream 8504 true Scaffold84: 169583-178086 Capsella grandiflora
Cagra.0084s0039 5.0kb downstream 5.0kb downstream 5000 false Scaffold84: 173087-178086 Capsella grandiflora
Cagra.0084s0039 10.0kb upstream 10.0kb upstream 13504 true Scaffold84: 159583-173086 Capsella grandiflora
Cagra.0084s0039 10.0kb upstream 10.0kb upstream 10000 false Scaffold84: 159583-169582 Capsella grandiflora
Cagra.0084s0039 10.0kb downstream 10.0kb downstream 13504 true Scaffold84: 169583-183086 Capsella grandiflora
Cagra.0084s0039 10.0kb downstream 10.0kb downstream 10000 false Scaffold84: 173087-183086 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360410 5261 Brassicaceae View MSA
123829680 5264 Brassicales-Malvales View MSA
124339790 5266 SBM View MSA
124238575 5268 Malvidae View MSA
124063008 5270 Rosid View MSA
123740915 5271 Pentapetalae View MSA
122789254 5272 Eudicot View MSA
122043860 5273 Angiosperm View MSA
121350965 5274 Embryophyte View MSA
123423965 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain