Gene : Cagra.0007s0054 C. grandiflora v1.1
Defline:  (1 of 2) PTHR33785:SF1 - GENOMIC DNA, CHROMOSOME 3, BAC CLONE:F4B12 Genomic Order:  54
Name:  ? Cagra.0007s0054 Secondary Identifier:  ? PAC:28903141
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0007s0054 0.5kb upstream 0.5kb upstream 2131 true Scaffold7: 189244-191374 Capsella grandiflora
Cagra.0007s0054 0.5kb upstream 0.5kb upstream 500 false Scaffold7: 190875-191374 Capsella grandiflora
Cagra.0007s0054 0.5kb downstream 0.5kb downstream 2131 true Scaffold7: 188744-190874 Capsella grandiflora
Cagra.0007s0054 0.5kb downstream 0.5kb downstream 500 false Scaffold7: 188744-189243 Capsella grandiflora
Cagra.0007s0054 1.0kb upstream 1.0kb upstream 2631 true Scaffold7: 189244-191874 Capsella grandiflora
Cagra.0007s0054 1.0kb upstream 1.0kb upstream 1000 false Scaffold7: 190875-191874 Capsella grandiflora
Cagra.0007s0054 1.0kb downstream 1.0kb downstream 2631 true Scaffold7: 188244-190874 Capsella grandiflora
Cagra.0007s0054 1.0kb downstream 1.0kb downstream 1000 false Scaffold7: 188244-189243 Capsella grandiflora
Cagra.0007s0054 2.0kb upstream 2.0kb upstream 3631 true Scaffold7: 189244-192874 Capsella grandiflora
Cagra.0007s0054 2.0kb upstream 2.0kb upstream 2000 false Scaffold7: 190875-192874 Capsella grandiflora
Cagra.0007s0054 2.0kb downstream 2.0kb downstream 3631 true Scaffold7: 187244-190874 Capsella grandiflora
Cagra.0007s0054 2.0kb downstream 2.0kb downstream 2000 false Scaffold7: 187244-189243 Capsella grandiflora
Cagra.0007s0054 5.0kb upstream 5.0kb upstream 6631 true Scaffold7: 189244-195874 Capsella grandiflora
Cagra.0007s0054 5.0kb upstream 5.0kb upstream 5000 false Scaffold7: 190875-195874 Capsella grandiflora
Cagra.0007s0054 5.0kb downstream 5.0kb downstream 6631 true Scaffold7: 184244-190874 Capsella grandiflora
Cagra.0007s0054 5.0kb downstream 5.0kb downstream 5000 false Scaffold7: 184244-189243 Capsella grandiflora
Cagra.0007s0054 10.0kb upstream 10.0kb upstream 11631 true Scaffold7: 189244-200874 Capsella grandiflora
Cagra.0007s0054 10.0kb upstream 10.0kb upstream 10000 false Scaffold7: 190875-200874 Capsella grandiflora
Cagra.0007s0054 10.0kb downstream 10.0kb downstream 11631 true Scaffold7: 179244-190874 Capsella grandiflora
Cagra.0007s0054 10.0kb downstream 10.0kb downstream 10000 false Scaffold7: 179244-189243 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365447 5261 Brassicaceae View MSA
123841674 5264 Brassicales-Malvales View MSA
124338493 5266 SBM View MSA
124250739 5268 Malvidae View MSA
124063782 5270 Rosid View MSA
123750914 5271 Pentapetalae View MSA
122795249 5272 Eudicot View MSA
122048968 5273 Angiosperm View MSA
121350568 5274 Embryophyte View MSA
123381799 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain