Gene : Cagra.0005s0002 C. grandiflora v1.1
Defline:  (1 of 2) 5.4.3.8 - Glutamate-1-semialdehyde 2,1-aminomutase / Glutamate-1-semialdehyde aminotransferase Genomic Order:  2
Name:  ? Cagra.0005s0002 Secondary Identifier:  ? PAC:28897148
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5188 Capsella grandiflora pathologic  
Cgrandiflora PWY-5918 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0005s0002 0.5kb upstream 0.5kb upstream 2517 true Scaffold5: 3821-6337 Capsella grandiflora
Cagra.0005s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold5: 3821-4320 Capsella grandiflora
Cagra.0005s0002 0.5kb downstream 0.5kb downstream 2517 true Scaffold5: 4321-6837 Capsella grandiflora
Cagra.0005s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold5: 6338-6837 Capsella grandiflora
Cagra.0005s0002 1.0kb upstream 1.0kb upstream 3017 true Scaffold5: 3321-6337 Capsella grandiflora
Cagra.0005s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold5: 3321-4320 Capsella grandiflora
Cagra.0005s0002 1.0kb downstream 1.0kb downstream 3017 true Scaffold5: 4321-7337 Capsella grandiflora
Cagra.0005s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold5: 6338-7337 Capsella grandiflora
Cagra.0005s0002 2.0kb upstream 2.0kb upstream 4017 true Scaffold5: 2321-6337 Capsella grandiflora
Cagra.0005s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold5: 2321-4320 Capsella grandiflora
Cagra.0005s0002 2.0kb downstream 2.0kb downstream 4017 true Scaffold5: 4321-8337 Capsella grandiflora
Cagra.0005s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold5: 6338-8337 Capsella grandiflora
Cagra.0005s0002 5.0kb upstream 5.0kb upstream 6337 true Scaffold5: 1-6337 Capsella grandiflora
Cagra.0005s0002 5.0kb upstream 5.0kb upstream 4320 false Scaffold5: 1-4320 Capsella grandiflora
Cagra.0005s0002 5.0kb downstream 5.0kb downstream 7017 true Scaffold5: 4321-11337 Capsella grandiflora
Cagra.0005s0002 5.0kb downstream 5.0kb downstream 5000 false Scaffold5: 6338-11337 Capsella grandiflora
Cagra.0005s0002 10.0kb upstream 10.0kb upstream 6337 true Scaffold5: 1-6337 Capsella grandiflora
Cagra.0005s0002 10.0kb upstream 10.0kb upstream 4320 false Scaffold5: 1-4320 Capsella grandiflora
Cagra.0005s0002 10.0kb downstream 10.0kb downstream 12017 true Scaffold5: 4321-16337 Capsella grandiflora
Cagra.0005s0002 10.0kb downstream 10.0kb downstream 10000 false Scaffold5: 6338-16337 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377192 5261 Brassicaceae View MSA
123838013 5264 Brassicales-Malvales View MSA
124339096 5266 SBM View MSA
124239994 5268 Malvidae View MSA
124066610 5270 Rosid View MSA
123741000 5271 Pentapetalae View MSA
122796730 5272 Eudicot View MSA
122042723 5273 Angiosperm View MSA
121344584 5274 Embryophyte View MSA
123423890 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain