Gene : Cagra.0005s0007 C. grandiflora v1.1
Defline:  (1 of 3) PTHR10627 - SCP160 Genomic Order:  7
Name:  ? Cagra.0005s0007 Secondary Identifier:  ? PAC:28897143
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0005s0007 0.5kb upstream 0.5kb upstream 2338 true Scaffold5: 40566-42903 Capsella grandiflora
Cagra.0005s0007 0.5kb upstream 0.5kb upstream 500 false Scaffold5: 42404-42903 Capsella grandiflora
Cagra.0005s0007 0.5kb downstream 0.5kb downstream 2338 true Scaffold5: 40066-42403 Capsella grandiflora
Cagra.0005s0007 0.5kb downstream 0.5kb downstream 500 false Scaffold5: 40066-40565 Capsella grandiflora
Cagra.0005s0007 1.0kb upstream 1.0kb upstream 2838 true Scaffold5: 40566-43403 Capsella grandiflora
Cagra.0005s0007 1.0kb upstream 1.0kb upstream 1000 false Scaffold5: 42404-43403 Capsella grandiflora
Cagra.0005s0007 1.0kb downstream 1.0kb downstream 2838 true Scaffold5: 39566-42403 Capsella grandiflora
Cagra.0005s0007 1.0kb downstream 1.0kb downstream 1000 false Scaffold5: 39566-40565 Capsella grandiflora
Cagra.0005s0007 2.0kb upstream 2.0kb upstream 3838 true Scaffold5: 40566-44403 Capsella grandiflora
Cagra.0005s0007 2.0kb upstream 2.0kb upstream 2000 false Scaffold5: 42404-44403 Capsella grandiflora
Cagra.0005s0007 2.0kb downstream 2.0kb downstream 3838 true Scaffold5: 38566-42403 Capsella grandiflora
Cagra.0005s0007 2.0kb downstream 2.0kb downstream 2000 false Scaffold5: 38566-40565 Capsella grandiflora
Cagra.0005s0007 5.0kb upstream 5.0kb upstream 6838 true Scaffold5: 40566-47403 Capsella grandiflora
Cagra.0005s0007 5.0kb upstream 5.0kb upstream 5000 false Scaffold5: 42404-47403 Capsella grandiflora
Cagra.0005s0007 5.0kb downstream 5.0kb downstream 6838 true Scaffold5: 35566-42403 Capsella grandiflora
Cagra.0005s0007 5.0kb downstream 5.0kb downstream 5000 false Scaffold5: 35566-40565 Capsella grandiflora
Cagra.0005s0007 10.0kb upstream 10.0kb upstream 11838 true Scaffold5: 40566-52403 Capsella grandiflora
Cagra.0005s0007 10.0kb upstream 10.0kb upstream 10000 false Scaffold5: 42404-52403 Capsella grandiflora
Cagra.0005s0007 10.0kb downstream 10.0kb downstream 11838 true Scaffold5: 30566-42403 Capsella grandiflora
Cagra.0005s0007 10.0kb downstream 10.0kb downstream 10000 false Scaffold5: 30566-40565 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363997 5261 Brassicaceae View MSA
123840750 5264 Brassicales-Malvales View MSA
124338382 5266 SBM View MSA
124238140 5268 Malvidae View MSA
124071735 5270 Rosid View MSA
123744350 5271 Pentapetalae View MSA
122788002 5272 Eudicot View MSA
122041679 5273 Angiosperm View MSA
121347667 5274 Embryophyte View MSA
123380594 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain