Gene : Cagra.0007s0021 C. grandiflora v1.1
Defline:  (1 of 1) PTHR10791//PTHR10791:SF57 - RAG1-ACTIVATING PROTEIN 1 Genomic Order:  21
Name:  ? Cagra.0007s0021 Secondary Identifier:  ? PAC:28903131
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0007s0021 0.5kb upstream 0.5kb upstream 2555 true Scaffold7: 61789-64343 Capsella grandiflora
Cagra.0007s0021 0.5kb upstream 0.5kb upstream 500 false Scaffold7: 63844-64343 Capsella grandiflora
Cagra.0007s0021 0.5kb downstream 0.5kb downstream 2555 true Scaffold7: 61289-63843 Capsella grandiflora
Cagra.0007s0021 0.5kb downstream 0.5kb downstream 500 false Scaffold7: 61289-61788 Capsella grandiflora
Cagra.0007s0021 1.0kb upstream 1.0kb upstream 3055 true Scaffold7: 61789-64843 Capsella grandiflora
Cagra.0007s0021 1.0kb upstream 1.0kb upstream 1000 false Scaffold7: 63844-64843 Capsella grandiflora
Cagra.0007s0021 1.0kb downstream 1.0kb downstream 3055 true Scaffold7: 60789-63843 Capsella grandiflora
Cagra.0007s0021 1.0kb downstream 1.0kb downstream 1000 false Scaffold7: 60789-61788 Capsella grandiflora
Cagra.0007s0021 2.0kb upstream 2.0kb upstream 4055 true Scaffold7: 61789-65843 Capsella grandiflora
Cagra.0007s0021 2.0kb upstream 2.0kb upstream 2000 false Scaffold7: 63844-65843 Capsella grandiflora
Cagra.0007s0021 2.0kb downstream 2.0kb downstream 4055 true Scaffold7: 59789-63843 Capsella grandiflora
Cagra.0007s0021 2.0kb downstream 2.0kb downstream 2000 false Scaffold7: 59789-61788 Capsella grandiflora
Cagra.0007s0021 5.0kb upstream 5.0kb upstream 7055 true Scaffold7: 61789-68843 Capsella grandiflora
Cagra.0007s0021 5.0kb upstream 5.0kb upstream 5000 false Scaffold7: 63844-68843 Capsella grandiflora
Cagra.0007s0021 5.0kb downstream 5.0kb downstream 7055 true Scaffold7: 56789-63843 Capsella grandiflora
Cagra.0007s0021 5.0kb downstream 5.0kb downstream 5000 false Scaffold7: 56789-61788 Capsella grandiflora
Cagra.0007s0021 10.0kb upstream 10.0kb upstream 12055 true Scaffold7: 61789-73843 Capsella grandiflora
Cagra.0007s0021 10.0kb upstream 10.0kb upstream 10000 false Scaffold7: 63844-73843 Capsella grandiflora
Cagra.0007s0021 10.0kb downstream 10.0kb downstream 12055 true Scaffold7: 51789-63843 Capsella grandiflora
Cagra.0007s0021 10.0kb downstream 10.0kb downstream 10000 false Scaffold7: 51789-61788 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369944 5261 Brassicaceae View MSA
123829514 5264 Brassicales-Malvales View MSA
124345539 5266 SBM View MSA
124253954 5268 Malvidae View MSA
124072962 5270 Rosid View MSA
123749486 5271 Pentapetalae View MSA
122796562 5272 Eudicot View MSA
122048091 5273 Angiosperm View MSA
121310847 5274 Embryophyte View MSA
123348232 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain