Gene : Cagra.0001s0024 C. grandiflora v1.1
Defline:  (1 of 1) PTHR23193 - NUCLEAR PORE COMPLEX PROTEIN (NUP) Genomic Order:  24
Name:  ? Cagra.0001s0024 Secondary Identifier:  ? PAC:28894736
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0001s0024 0.5kb upstream 0.5kb upstream 9071 true Scaffold1: 100771-109841 Capsella grandiflora
Cagra.0001s0024 0.5kb upstream 0.5kb upstream 500 false Scaffold1: 100771-101270 Capsella grandiflora
Cagra.0001s0024 0.5kb downstream 0.5kb downstream 9071 true Scaffold1: 101271-110341 Capsella grandiflora
Cagra.0001s0024 0.5kb downstream 0.5kb downstream 500 false Scaffold1: 109842-110341 Capsella grandiflora
Cagra.0001s0024 1.0kb upstream 1.0kb upstream 9571 true Scaffold1: 100271-109841 Capsella grandiflora
Cagra.0001s0024 1.0kb upstream 1.0kb upstream 1000 false Scaffold1: 100271-101270 Capsella grandiflora
Cagra.0001s0024 1.0kb downstream 1.0kb downstream 9571 true Scaffold1: 101271-110841 Capsella grandiflora
Cagra.0001s0024 1.0kb downstream 1.0kb downstream 1000 false Scaffold1: 109842-110841 Capsella grandiflora
Cagra.0001s0024 2.0kb upstream 2.0kb upstream 10571 true Scaffold1: 99271-109841 Capsella grandiflora
Cagra.0001s0024 2.0kb upstream 2.0kb upstream 2000 false Scaffold1: 99271-101270 Capsella grandiflora
Cagra.0001s0024 2.0kb downstream 2.0kb downstream 10571 true Scaffold1: 101271-111841 Capsella grandiflora
Cagra.0001s0024 2.0kb downstream 2.0kb downstream 2000 false Scaffold1: 109842-111841 Capsella grandiflora
Cagra.0001s0024 5.0kb upstream 5.0kb upstream 13571 true Scaffold1: 96271-109841 Capsella grandiflora
Cagra.0001s0024 5.0kb upstream 5.0kb upstream 5000 false Scaffold1: 96271-101270 Capsella grandiflora
Cagra.0001s0024 5.0kb downstream 5.0kb downstream 13571 true Scaffold1: 101271-114841 Capsella grandiflora
Cagra.0001s0024 5.0kb downstream 5.0kb downstream 5000 false Scaffold1: 109842-114841 Capsella grandiflora
Cagra.0001s0024 10.0kb upstream 10.0kb upstream 18571 true Scaffold1: 91271-109841 Capsella grandiflora
Cagra.0001s0024 10.0kb upstream 10.0kb upstream 10000 false Scaffold1: 91271-101270 Capsella grandiflora
Cagra.0001s0024 10.0kb downstream 10.0kb downstream 18571 true Scaffold1: 101271-119841 Capsella grandiflora
Cagra.0001s0024 10.0kb downstream 10.0kb downstream 10000 false Scaffold1: 109842-119841 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361953 5261 Brassicaceae View MSA
123831775 5264 Brassicales-Malvales View MSA
124345767 5266 SBM View MSA
124238833 5268 Malvidae View MSA
124067866 5270 Rosid View MSA
123739810 5271 Pentapetalae View MSA
122786045 5272 Eudicot View MSA
122042091 5273 Angiosperm View MSA
121347011 5274 Embryophyte View MSA
123424066 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain