Gene : Cagra.0179s0010 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11062//PTHR11062:SF113 - EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED Genomic Order:  10
Name:  ? Cagra.0179s0010 Secondary Identifier:  ? PAC:28909755
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5980 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0179s0010 0.5kb upstream 0.5kb upstream 3210 true Scaffold179: 32552-35761 Capsella grandiflora
Cagra.0179s0010 0.5kb upstream 0.5kb upstream 500 false Scaffold179: 35262-35761 Capsella grandiflora
Cagra.0179s0010 0.5kb downstream 0.5kb downstream 3210 true Scaffold179: 32052-35261 Capsella grandiflora
Cagra.0179s0010 0.5kb downstream 0.5kb downstream 500 false Scaffold179: 32052-32551 Capsella grandiflora
Cagra.0179s0010 1.0kb upstream 1.0kb upstream 3710 true Scaffold179: 32552-36261 Capsella grandiflora
Cagra.0179s0010 1.0kb upstream 1.0kb upstream 1000 false Scaffold179: 35262-36261 Capsella grandiflora
Cagra.0179s0010 1.0kb downstream 1.0kb downstream 3710 true Scaffold179: 31552-35261 Capsella grandiflora
Cagra.0179s0010 1.0kb downstream 1.0kb downstream 1000 false Scaffold179: 31552-32551 Capsella grandiflora
Cagra.0179s0010 2.0kb upstream 2.0kb upstream 4710 true Scaffold179: 32552-37261 Capsella grandiflora
Cagra.0179s0010 2.0kb upstream 2.0kb upstream 2000 false Scaffold179: 35262-37261 Capsella grandiflora
Cagra.0179s0010 2.0kb downstream 2.0kb downstream 4710 true Scaffold179: 30552-35261 Capsella grandiflora
Cagra.0179s0010 2.0kb downstream 2.0kb downstream 2000 false Scaffold179: 30552-32551 Capsella grandiflora
Cagra.0179s0010 5.0kb upstream 5.0kb upstream 7710 true Scaffold179: 32552-40261 Capsella grandiflora
Cagra.0179s0010 5.0kb upstream 5.0kb upstream 5000 false Scaffold179: 35262-40261 Capsella grandiflora
Cagra.0179s0010 5.0kb downstream 5.0kb downstream 7710 true Scaffold179: 27552-35261 Capsella grandiflora
Cagra.0179s0010 5.0kb downstream 5.0kb downstream 5000 false Scaffold179: 27552-32551 Capsella grandiflora
Cagra.0179s0010 10.0kb upstream 10.0kb upstream 12710 true Scaffold179: 32552-45261 Capsella grandiflora
Cagra.0179s0010 10.0kb upstream 10.0kb upstream 10000 false Scaffold179: 35262-45261 Capsella grandiflora
Cagra.0179s0010 10.0kb downstream 10.0kb downstream 12710 true Scaffold179: 22552-35261 Capsella grandiflora
Cagra.0179s0010 10.0kb downstream 10.0kb downstream 10000 false Scaffold179: 22552-32551 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367864 5261 Brassicaceae View MSA
123832735 5264 Brassicales-Malvales View MSA
124351163 5266 SBM View MSA
124252793 5268 Malvidae View MSA
124072198 5270 Rosid View MSA
123751032 5271 Pentapetalae View MSA
122797278 5272 Eudicot View MSA
122050562 5273 Angiosperm View MSA
121350610 5274 Embryophyte View MSA
123428712 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain