Gene : Cagra.0202s0002 C. grandiflora v1.1
Defline:  (1 of 5) 4.2.1.33 - 3-isopropylmalate dehydratase / Isopropylmalate isomerase Genomic Order:  2
Name:  ? Cagra.0202s0002 Secondary Identifier:  ? PAC:28919026
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora BRANCHED-CHAIN-AA-SYN-PWY Capsella grandiflora pathologic  
Cgrandiflora LEUSYN-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0202s0002 0.5kb upstream 0.5kb upstream 2211 true Scaffold202: 1115-3325 Capsella grandiflora
Cagra.0202s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold202: 2826-3325 Capsella grandiflora
Cagra.0202s0002 0.5kb downstream 0.5kb downstream 2211 true Scaffold202: 615-2825 Capsella grandiflora
Cagra.0202s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold202: 615-1114 Capsella grandiflora
Cagra.0202s0002 1.0kb upstream 1.0kb upstream 2711 true Scaffold202: 1115-3825 Capsella grandiflora
Cagra.0202s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold202: 2826-3825 Capsella grandiflora
Cagra.0202s0002 1.0kb downstream 1.0kb downstream 2711 true Scaffold202: 115-2825 Capsella grandiflora
Cagra.0202s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold202: 115-1114 Capsella grandiflora
Cagra.0202s0002 2.0kb upstream 2.0kb upstream 3711 true Scaffold202: 1115-4825 Capsella grandiflora
Cagra.0202s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold202: 2826-4825 Capsella grandiflora
Cagra.0202s0002 2.0kb downstream 2.0kb downstream 2825 true Scaffold202: 1-2825 Capsella grandiflora
Cagra.0202s0002 2.0kb downstream 2.0kb downstream 1114 false Scaffold202: 1-1114 Capsella grandiflora
Cagra.0202s0002 5.0kb upstream 5.0kb upstream 6711 true Scaffold202: 1115-7825 Capsella grandiflora
Cagra.0202s0002 5.0kb upstream 5.0kb upstream 5000 false Scaffold202: 2826-7825 Capsella grandiflora
Cagra.0202s0002 5.0kb downstream 5.0kb downstream 2825 true Scaffold202: 1-2825 Capsella grandiflora
Cagra.0202s0002 5.0kb downstream 5.0kb downstream 1114 false Scaffold202: 1-1114 Capsella grandiflora
Cagra.0202s0002 10.0kb upstream 10.0kb upstream 11711 true Scaffold202: 1115-12825 Capsella grandiflora
Cagra.0202s0002 10.0kb upstream 10.0kb upstream 10000 false Scaffold202: 2826-12825 Capsella grandiflora
Cagra.0202s0002 10.0kb downstream 10.0kb downstream 2825 true Scaffold202: 1-2825 Capsella grandiflora
Cagra.0202s0002 10.0kb downstream 10.0kb downstream 1114 false Scaffold202: 1-1114 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040980 5273 Angiosperm View MSA
122362047 5261 Brassicaceae View MSA
123839118 5264 Brassicales-Malvales View MSA
124338093 5266 SBM View MSA
124250878 5268 Malvidae View MSA
124068442 5270 Rosid View MSA
123736502 5271 Pentapetalae View MSA
122789957 5272 Eudicot View MSA
121345878 5274 Embryophyte View MSA
123423763 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain