Gene : Cagra.0202s0006 C. grandiflora v1.1
Defline:  (1 of 2) PTHR31707:SF29 - PECTINESTERASE/PECTINESTERASE INHIBITOR 16-RELATED Genomic Order:  6
Name:  ? Cagra.0202s0006 Secondary Identifier:  ? PAC:28919057
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-1081 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0202s0006 0.5kb upstream 0.5kb upstream 2787 true Scaffold202: 16873-19659 Capsella grandiflora
Cagra.0202s0006 0.5kb upstream 0.5kb upstream 500 false Scaffold202: 19160-19659 Capsella grandiflora
Cagra.0202s0006 0.5kb downstream 0.5kb downstream 2787 true Scaffold202: 16373-19159 Capsella grandiflora
Cagra.0202s0006 0.5kb downstream 0.5kb downstream 500 false Scaffold202: 16373-16872 Capsella grandiflora
Cagra.0202s0006 1.0kb upstream 1.0kb upstream 3287 true Scaffold202: 16873-20159 Capsella grandiflora
Cagra.0202s0006 1.0kb upstream 1.0kb upstream 1000 false Scaffold202: 19160-20159 Capsella grandiflora
Cagra.0202s0006 1.0kb downstream 1.0kb downstream 3287 true Scaffold202: 15873-19159 Capsella grandiflora
Cagra.0202s0006 1.0kb downstream 1.0kb downstream 1000 false Scaffold202: 15873-16872 Capsella grandiflora
Cagra.0202s0006 2.0kb upstream 2.0kb upstream 4287 true Scaffold202: 16873-21159 Capsella grandiflora
Cagra.0202s0006 2.0kb upstream 2.0kb upstream 2000 false Scaffold202: 19160-21159 Capsella grandiflora
Cagra.0202s0006 2.0kb downstream 2.0kb downstream 4287 true Scaffold202: 14873-19159 Capsella grandiflora
Cagra.0202s0006 2.0kb downstream 2.0kb downstream 2000 false Scaffold202: 14873-16872 Capsella grandiflora
Cagra.0202s0006 5.0kb upstream 5.0kb upstream 7287 true Scaffold202: 16873-24159 Capsella grandiflora
Cagra.0202s0006 5.0kb upstream 5.0kb upstream 5000 false Scaffold202: 19160-24159 Capsella grandiflora
Cagra.0202s0006 5.0kb downstream 5.0kb downstream 7287 true Scaffold202: 11873-19159 Capsella grandiflora
Cagra.0202s0006 5.0kb downstream 5.0kb downstream 5000 false Scaffold202: 11873-16872 Capsella grandiflora
Cagra.0202s0006 10.0kb upstream 10.0kb upstream 12287 true Scaffold202: 16873-29159 Capsella grandiflora
Cagra.0202s0006 10.0kb upstream 10.0kb upstream 10000 false Scaffold202: 19160-29159 Capsella grandiflora
Cagra.0202s0006 10.0kb downstream 10.0kb downstream 12287 true Scaffold202: 6873-19159 Capsella grandiflora
Cagra.0202s0006 10.0kb downstream 10.0kb downstream 10000 false Scaffold202: 6873-16872 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376609 5261 Brassicaceae View MSA
123801306 5264 Brassicales-Malvales View MSA
124298628 5266 SBM View MSA
124252795 5268 Malvidae View MSA
124068551 5270 Rosid View MSA
123627858 5271 Pentapetalae View MSA
122790137 5272 Eudicot View MSA
122051530 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain