Gene : Cagra.0154s0018 C. grandiflora v1.1
Defline:  (1 of 2) 2.3.3.9 - Malate synthase / Malic-condensing enzyme Genomic Order:  18
Name:  ? Cagra.0154s0018 Secondary Identifier:  ? PAC:28918979
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora GLYOXYLATE-BYPASS Capsella grandiflora pathologic  
Cgrandiflora PWY-561 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0154s0018 0.5kb upstream 0.5kb upstream 2860 true Scaffold154: 51922-54781 Capsella grandiflora
Cagra.0154s0018 0.5kb upstream 0.5kb upstream 500 false Scaffold154: 51922-52421 Capsella grandiflora
Cagra.0154s0018 0.5kb downstream 0.5kb downstream 2860 true Scaffold154: 52422-55281 Capsella grandiflora
Cagra.0154s0018 0.5kb downstream 0.5kb downstream 500 false Scaffold154: 54782-55281 Capsella grandiflora
Cagra.0154s0018 1.0kb upstream 1.0kb upstream 3360 true Scaffold154: 51422-54781 Capsella grandiflora
Cagra.0154s0018 1.0kb upstream 1.0kb upstream 1000 false Scaffold154: 51422-52421 Capsella grandiflora
Cagra.0154s0018 1.0kb downstream 1.0kb downstream 3360 true Scaffold154: 52422-55781 Capsella grandiflora
Cagra.0154s0018 1.0kb downstream 1.0kb downstream 1000 false Scaffold154: 54782-55781 Capsella grandiflora
Cagra.0154s0018 2.0kb upstream 2.0kb upstream 4360 true Scaffold154: 50422-54781 Capsella grandiflora
Cagra.0154s0018 2.0kb upstream 2.0kb upstream 2000 false Scaffold154: 50422-52421 Capsella grandiflora
Cagra.0154s0018 2.0kb downstream 2.0kb downstream 4360 true Scaffold154: 52422-56781 Capsella grandiflora
Cagra.0154s0018 2.0kb downstream 2.0kb downstream 2000 false Scaffold154: 54782-56781 Capsella grandiflora
Cagra.0154s0018 5.0kb upstream 5.0kb upstream 7360 true Scaffold154: 47422-54781 Capsella grandiflora
Cagra.0154s0018 5.0kb upstream 5.0kb upstream 5000 false Scaffold154: 47422-52421 Capsella grandiflora
Cagra.0154s0018 5.0kb downstream 5.0kb downstream 7360 true Scaffold154: 52422-59781 Capsella grandiflora
Cagra.0154s0018 5.0kb downstream 5.0kb downstream 5000 false Scaffold154: 54782-59781 Capsella grandiflora
Cagra.0154s0018 10.0kb upstream 10.0kb upstream 12360 true Scaffold154: 42422-54781 Capsella grandiflora
Cagra.0154s0018 10.0kb upstream 10.0kb upstream 10000 false Scaffold154: 42422-52421 Capsella grandiflora
Cagra.0154s0018 10.0kb downstream 10.0kb downstream 12360 true Scaffold154: 52422-64781 Capsella grandiflora
Cagra.0154s0018 10.0kb downstream 10.0kb downstream 10000 false Scaffold154: 54782-64781 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375054 5261 Brassicaceae View MSA
123830660 5264 Brassicales-Malvales View MSA
124341065 5266 SBM View MSA
124239458 5268 Malvidae View MSA
124066130 5270 Rosid View MSA
123738008 5271 Pentapetalae View MSA
122788677 5272 Eudicot View MSA
122048246 5273 Angiosperm View MSA
121346455 5274 Embryophyte View MSA
123425007 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain