Gene : Cagra.0154s0027 C. grandiflora v1.1
Defline:  (1 of 1) 2.4.99.12 - Lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase / Lipid IV(A) KDO transferase Genomic Order:  27
Name:  ? Cagra.0154s0027 Secondary Identifier:  ? PAC:28918999
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora KDOSYN-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0154s0027 0.5kb upstream 0.5kb upstream 3180 true Scaffold154: 94834-98013 Capsella grandiflora
Cagra.0154s0027 0.5kb upstream 0.5kb upstream 500 false Scaffold154: 97514-98013 Capsella grandiflora
Cagra.0154s0027 0.5kb downstream 0.5kb downstream 3180 true Scaffold154: 94334-97513 Capsella grandiflora
Cagra.0154s0027 0.5kb downstream 0.5kb downstream 500 false Scaffold154: 94334-94833 Capsella grandiflora
Cagra.0154s0027 1.0kb upstream 1.0kb upstream 3680 true Scaffold154: 94834-98513 Capsella grandiflora
Cagra.0154s0027 1.0kb upstream 1.0kb upstream 1000 false Scaffold154: 97514-98513 Capsella grandiflora
Cagra.0154s0027 1.0kb downstream 1.0kb downstream 3680 true Scaffold154: 93834-97513 Capsella grandiflora
Cagra.0154s0027 1.0kb downstream 1.0kb downstream 1000 false Scaffold154: 93834-94833 Capsella grandiflora
Cagra.0154s0027 2.0kb upstream 2.0kb upstream 4680 true Scaffold154: 94834-99513 Capsella grandiflora
Cagra.0154s0027 2.0kb upstream 2.0kb upstream 2000 false Scaffold154: 97514-99513 Capsella grandiflora
Cagra.0154s0027 2.0kb downstream 2.0kb downstream 4680 true Scaffold154: 92834-97513 Capsella grandiflora
Cagra.0154s0027 2.0kb downstream 2.0kb downstream 2000 false Scaffold154: 92834-94833 Capsella grandiflora
Cagra.0154s0027 5.0kb upstream 5.0kb upstream 7680 true Scaffold154: 94834-102513 Capsella grandiflora
Cagra.0154s0027 5.0kb upstream 5.0kb upstream 5000 false Scaffold154: 97514-102513 Capsella grandiflora
Cagra.0154s0027 5.0kb downstream 5.0kb downstream 7680 true Scaffold154: 89834-97513 Capsella grandiflora
Cagra.0154s0027 5.0kb downstream 5.0kb downstream 5000 false Scaffold154: 89834-94833 Capsella grandiflora
Cagra.0154s0027 10.0kb upstream 10.0kb upstream 12680 true Scaffold154: 94834-107513 Capsella grandiflora
Cagra.0154s0027 10.0kb upstream 10.0kb upstream 10000 false Scaffold154: 97514-107513 Capsella grandiflora
Cagra.0154s0027 10.0kb downstream 10.0kb downstream 12680 true Scaffold154: 84834-97513 Capsella grandiflora
Cagra.0154s0027 10.0kb downstream 10.0kb downstream 10000 false Scaffold154: 84834-94833 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371512 5261 Brassicaceae View MSA
123828711 5264 Brassicales-Malvales View MSA
124321549 5266 SBM View MSA
124242327 5268 Malvidae View MSA
124064068 5270 Rosid View MSA
123737995 5271 Pentapetalae View MSA
122793703 5272 Eudicot View MSA
122042607 5273 Angiosperm View MSA
121344444 5274 Embryophyte View MSA
123380045 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain