Gene : Cagra.0154s0029 C. grandiflora v1.1
Defline:  (1 of 3) PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATED Genomic Order:  29
Name:  ? Cagra.0154s0029 Secondary Identifier:  ? PAC:28918992
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0154s0029 0.5kb upstream 0.5kb upstream 2880 true Scaffold154: 108851-111730 Capsella grandiflora
Cagra.0154s0029 0.5kb upstream 0.5kb upstream 500 false Scaffold154: 111231-111730 Capsella grandiflora
Cagra.0154s0029 0.5kb downstream 0.5kb downstream 2880 true Scaffold154: 108351-111230 Capsella grandiflora
Cagra.0154s0029 0.5kb downstream 0.5kb downstream 500 false Scaffold154: 108351-108850 Capsella grandiflora
Cagra.0154s0029 1.0kb upstream 1.0kb upstream 3380 true Scaffold154: 108851-112230 Capsella grandiflora
Cagra.0154s0029 1.0kb upstream 1.0kb upstream 1000 false Scaffold154: 111231-112230 Capsella grandiflora
Cagra.0154s0029 1.0kb downstream 1.0kb downstream 3380 true Scaffold154: 107851-111230 Capsella grandiflora
Cagra.0154s0029 1.0kb downstream 1.0kb downstream 1000 false Scaffold154: 107851-108850 Capsella grandiflora
Cagra.0154s0029 2.0kb upstream 2.0kb upstream 4380 true Scaffold154: 108851-113230 Capsella grandiflora
Cagra.0154s0029 2.0kb upstream 2.0kb upstream 2000 false Scaffold154: 111231-113230 Capsella grandiflora
Cagra.0154s0029 2.0kb downstream 2.0kb downstream 4380 true Scaffold154: 106851-111230 Capsella grandiflora
Cagra.0154s0029 2.0kb downstream 2.0kb downstream 2000 false Scaffold154: 106851-108850 Capsella grandiflora
Cagra.0154s0029 5.0kb upstream 5.0kb upstream 7380 true Scaffold154: 108851-116230 Capsella grandiflora
Cagra.0154s0029 5.0kb upstream 5.0kb upstream 5000 false Scaffold154: 111231-116230 Capsella grandiflora
Cagra.0154s0029 5.0kb downstream 5.0kb downstream 7380 true Scaffold154: 103851-111230 Capsella grandiflora
Cagra.0154s0029 5.0kb downstream 5.0kb downstream 5000 false Scaffold154: 103851-108850 Capsella grandiflora
Cagra.0154s0029 10.0kb upstream 10.0kb upstream 12380 true Scaffold154: 108851-121230 Capsella grandiflora
Cagra.0154s0029 10.0kb upstream 10.0kb upstream 10000 false Scaffold154: 111231-121230 Capsella grandiflora
Cagra.0154s0029 10.0kb downstream 10.0kb downstream 12380 true Scaffold154: 98851-111230 Capsella grandiflora
Cagra.0154s0029 10.0kb downstream 10.0kb downstream 10000 false Scaffold154: 98851-108850 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363736 5261 Brassicaceae View MSA
123839233 5264 Brassicales-Malvales View MSA
124343902 5266 SBM View MSA
124252646 5268 Malvidae View MSA
124068201 5270 Rosid View MSA
123749750 5271 Pentapetalae View MSA
122797243 5272 Eudicot View MSA
122051478 5273 Angiosperm View MSA
123428998 5275 Viridiplantae View MSA
121349885 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain