Gene : Cagra.0160s0002 C. grandiflora v1.1
Defline:  (1 of 2) PTHR11851//PTHR11851:SF145 - METALLOPROTEASE Genomic Order:  2
Name:  ? Cagra.0160s0002 Secondary Identifier:  ? PAC:28912554
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-3781 Capsella grandiflora pathologic  
Cgrandiflora PWY-7279 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0160s0002 0.5kb upstream 0.5kb upstream 4069 true Scaffold160: 1334-5402 Capsella grandiflora
Cagra.0160s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold160: 1334-1833 Capsella grandiflora
Cagra.0160s0002 0.5kb downstream 0.5kb downstream 4069 true Scaffold160: 1834-5902 Capsella grandiflora
Cagra.0160s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold160: 5403-5902 Capsella grandiflora
Cagra.0160s0002 1.0kb upstream 1.0kb upstream 4569 true Scaffold160: 834-5402 Capsella grandiflora
Cagra.0160s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold160: 834-1833 Capsella grandiflora
Cagra.0160s0002 1.0kb downstream 1.0kb downstream 4569 true Scaffold160: 1834-6402 Capsella grandiflora
Cagra.0160s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold160: 5403-6402 Capsella grandiflora
Cagra.0160s0002 2.0kb upstream 2.0kb upstream 5402 true Scaffold160: 1-5402 Capsella grandiflora
Cagra.0160s0002 2.0kb upstream 2.0kb upstream 1833 false Scaffold160: 1-1833 Capsella grandiflora
Cagra.0160s0002 2.0kb downstream 2.0kb downstream 5569 true Scaffold160: 1834-7402 Capsella grandiflora
Cagra.0160s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold160: 5403-7402 Capsella grandiflora
Cagra.0160s0002 5.0kb upstream 5.0kb upstream 5402 true Scaffold160: 1-5402 Capsella grandiflora
Cagra.0160s0002 5.0kb upstream 5.0kb upstream 1833 false Scaffold160: 1-1833 Capsella grandiflora
Cagra.0160s0002 5.0kb downstream 5.0kb downstream 8569 true Scaffold160: 1834-10402 Capsella grandiflora
Cagra.0160s0002 5.0kb downstream 5.0kb downstream 5000 false Scaffold160: 5403-10402 Capsella grandiflora
Cagra.0160s0002 10.0kb upstream 10.0kb upstream 5402 true Scaffold160: 1-5402 Capsella grandiflora
Cagra.0160s0002 10.0kb upstream 10.0kb upstream 1833 false Scaffold160: 1-1833 Capsella grandiflora
Cagra.0160s0002 10.0kb downstream 10.0kb downstream 13569 true Scaffold160: 1834-15402 Capsella grandiflora
Cagra.0160s0002 10.0kb downstream 10.0kb downstream 10000 false Scaffold160: 5403-15402 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041394 5273 Angiosperm View MSA
122370370 5261 Brassicaceae View MSA
123837486 5264 Brassicales-Malvales View MSA
124346987 5266 SBM View MSA
124244870 5268 Malvidae View MSA
124064083 5270 Rosid View MSA
123738249 5271 Pentapetalae View MSA
122789346 5272 Eudicot View MSA
121350423 5274 Embryophyte View MSA
123425006 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain