Gene : Cagra.0159s0002 C. grandiflora v1.1
Defline:  (1 of 13) PF13963 - Transposase-associated domain (Transpos_assoc) Genomic Order:  2
Name:  ? Cagra.0159s0002 Secondary Identifier:  ? PAC:28904211
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0159s0002 0.5kb upstream 0.5kb upstream 1013 true Scaffold159: 33944-34956 Capsella grandiflora
Cagra.0159s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold159: 33944-34443 Capsella grandiflora
Cagra.0159s0002 0.5kb downstream 0.5kb downstream 1013 true Scaffold159: 34444-35456 Capsella grandiflora
Cagra.0159s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold159: 34957-35456 Capsella grandiflora
Cagra.0159s0002 1.0kb upstream 1.0kb upstream 1513 true Scaffold159: 33444-34956 Capsella grandiflora
Cagra.0159s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold159: 33444-34443 Capsella grandiflora
Cagra.0159s0002 1.0kb downstream 1.0kb downstream 1513 true Scaffold159: 34444-35956 Capsella grandiflora
Cagra.0159s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold159: 34957-35956 Capsella grandiflora
Cagra.0159s0002 2.0kb upstream 2.0kb upstream 2513 true Scaffold159: 32444-34956 Capsella grandiflora
Cagra.0159s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold159: 32444-34443 Capsella grandiflora
Cagra.0159s0002 2.0kb downstream 2.0kb downstream 2513 true Scaffold159: 34444-36956 Capsella grandiflora
Cagra.0159s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold159: 34957-36956 Capsella grandiflora
Cagra.0159s0002 5.0kb upstream 5.0kb upstream 5513 true Scaffold159: 29444-34956 Capsella grandiflora
Cagra.0159s0002 5.0kb upstream 5.0kb upstream 5000 false Scaffold159: 29444-34443 Capsella grandiflora
Cagra.0159s0002 5.0kb downstream 5.0kb downstream 5513 true Scaffold159: 34444-39956 Capsella grandiflora
Cagra.0159s0002 5.0kb downstream 5.0kb downstream 5000 false Scaffold159: 34957-39956 Capsella grandiflora
Cagra.0159s0002 10.0kb upstream 10.0kb upstream 10513 true Scaffold159: 24444-34956 Capsella grandiflora
Cagra.0159s0002 10.0kb upstream 10.0kb upstream 10000 false Scaffold159: 24444-34443 Capsella grandiflora
Cagra.0159s0002 10.0kb downstream 10.0kb downstream 10513 true Scaffold159: 34444-44956 Capsella grandiflora
Cagra.0159s0002 10.0kb downstream 10.0kb downstream 10000 false Scaffold159: 34957-44956 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122332713 5261 Brassicaceae Singleton cluster - no MSA
123773755 5264 Brassicales-Malvales Singleton cluster - no MSA
124272222 5266 SBM Singleton cluster - no MSA
124128084 5268 Malvidae Singleton cluster - no MSA
123856852 5270 Rosid Singleton cluster - no MSA
123752947 5271 Pentapetalae View MSA
122774877 5272 Eudicot View MSA
122050110 5273 Angiosperm View MSA
121351710 5274 Embryophyte View MSA
123427809 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain