Gene : Cagra.0133s0116 C. grandiflora v1.1
Defline:  (1 of 2) PTHR11728:SF17 - 6-PHOSPHOGLUCONATE DEHYDROGENASE-LIKE PROTEIN Genomic Order:  116
Name:  ? Cagra.0133s0116 Secondary Identifier:  ? PAC:28899436
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-6118 Capsella grandiflora pathologic  
Cgrandiflora PWY-7411 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0133s0116 0.5kb upstream 0.5kb upstream 3186 true Scaffold133: 427725-430910 Capsella grandiflora
Cagra.0133s0116 0.5kb upstream 0.5kb upstream 500 false Scaffold133: 427725-428224 Capsella grandiflora
Cagra.0133s0116 0.5kb downstream 0.5kb downstream 3186 true Scaffold133: 428225-431410 Capsella grandiflora
Cagra.0133s0116 0.5kb downstream 0.5kb downstream 500 false Scaffold133: 430911-431410 Capsella grandiflora
Cagra.0133s0116 1.0kb upstream 1.0kb upstream 3686 true Scaffold133: 427225-430910 Capsella grandiflora
Cagra.0133s0116 1.0kb upstream 1.0kb upstream 1000 false Scaffold133: 427225-428224 Capsella grandiflora
Cagra.0133s0116 1.0kb downstream 1.0kb downstream 3686 true Scaffold133: 428225-431910 Capsella grandiflora
Cagra.0133s0116 1.0kb downstream 1.0kb downstream 1000 false Scaffold133: 430911-431910 Capsella grandiflora
Cagra.0133s0116 2.0kb upstream 2.0kb upstream 4686 true Scaffold133: 426225-430910 Capsella grandiflora
Cagra.0133s0116 2.0kb upstream 2.0kb upstream 2000 false Scaffold133: 426225-428224 Capsella grandiflora
Cagra.0133s0116 2.0kb downstream 2.0kb downstream 4686 true Scaffold133: 428225-432910 Capsella grandiflora
Cagra.0133s0116 2.0kb downstream 2.0kb downstream 2000 false Scaffold133: 430911-432910 Capsella grandiflora
Cagra.0133s0116 5.0kb upstream 5.0kb upstream 7686 true Scaffold133: 423225-430910 Capsella grandiflora
Cagra.0133s0116 5.0kb upstream 5.0kb upstream 5000 false Scaffold133: 423225-428224 Capsella grandiflora
Cagra.0133s0116 5.0kb downstream 5.0kb downstream 7686 true Scaffold133: 428225-435910 Capsella grandiflora
Cagra.0133s0116 5.0kb downstream 5.0kb downstream 5000 false Scaffold133: 430911-435910 Capsella grandiflora
Cagra.0133s0116 10.0kb upstream 10.0kb upstream 12686 true Scaffold133: 418225-430910 Capsella grandiflora
Cagra.0133s0116 10.0kb upstream 10.0kb upstream 10000 false Scaffold133: 418225-428224 Capsella grandiflora
Cagra.0133s0116 10.0kb downstream 10.0kb downstream 12686 true Scaffold133: 428225-440910 Capsella grandiflora
Cagra.0133s0116 10.0kb downstream 10.0kb downstream 10000 false Scaffold133: 430911-440910 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362250 5261 Brassicaceae View MSA
123798336 5264 Brassicales-Malvales View MSA
124295989 5266 SBM View MSA
124245470 5268 Malvidae View MSA
124069658 5270 Rosid View MSA
123738520 5271 Pentapetalae View MSA
122790520 5272 Eudicot View MSA
122046820 5273 Angiosperm View MSA
121349677 5274 Embryophyte View MSA
123381397 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain